LINC02496

Summary

LINC02496 (long intergenic non-protein coding RNA 2496, HGNC:53480) is a long non-coding RNA gene on chromosome 4q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53480
Approved symbol	LINC02496
Name	long intergenic non-protein coding RNA 2496
Location	4q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249066
Ensembl biotype	lncRNA
Entrez	105377248
RNAcentral	URS00026A21C4 — lncRNA, 1318 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000509559, ENST00000655846

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000509559 — 2 exons

Exon	Start	End
ENSE00002082785	60789815	60790081
ENSE00003878221	60750575	60750865

Expression profiles

Bgee: expression breadth broad, 33 present calls, max score 91.03.

Top tissues by expression

33 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.03	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.65	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.58	gold quality
blood	UBERON:0000178	58.53	gold quality
stromal cell of endometrium	CL:0002255	54.43	silver quality
vermiform appendix	UBERON:0001154	52.00	gold quality
monocyte	CL:0000576	49.68	silver quality
nucleus accumbens	UBERON:0001882	49.42	gold quality
left adrenal gland cortex	UBERON:0035825	48.90	gold quality
Brodmann (1909) area 9	UBERON:0013540	48.50	gold quality
ascending aorta	UBERON:0001496	46.50	gold quality
gastrocnemius	UBERON:0001388	46.41	gold quality
adipose tissue	UBERON:0001013	46.33	gold quality
small intestine	UBERON:0002108	45.94	silver quality
muscle layer of sigmoid colon	UBERON:0035805	45.72	gold quality
prefrontal cortex	UBERON:0000451	45.21	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	44.72	silver quality
right lobe of liver	UBERON:0001114	43.90	silver quality
skin of leg	UBERON:0001511	43.62	gold quality
tibial artery	UBERON:0007610	42.92	silver quality
vagina	UBERON:0000996	41.19	silver quality
right coronary artery	UBERON:0001625	41.10	silver quality
testis	UBERON:0000473	40.93	gold quality
left testis	UBERON:0004533	40.92	gold quality
lung	UBERON:0002048	40.22	silver quality
right testis	UBERON:0004534	40.20	gold quality
subcutaneous adipose tissue	UBERON:0002190	38.74	silver quality
stomach	UBERON:0000945	38.20	silver quality
tibial nerve	UBERON:0001323	37.84	silver quality
skin of abdomen	UBERON:0001416	37.71	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.