LINC02499

Summary

LINC02499 (long intergenic non-protein coding RNA 2499, HGNC:53484) is a long non-coding RNA gene on chromosome 4q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53484
Approved symbol	LINC02499
Name	long intergenic non-protein coding RNA 2499
Location	4q13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250436
Ensembl biotype	lncRNA
Entrez	728040
RNAcentral	URS0000614779 — lncRNA, 763 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000502291, ENST00000504368, ENST00000508147, ENST00000771832, ENST00000771833, ENST00000771834

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502291 — 4 exons

Exon	Start	End
ENSE00002031363	73508803	73509252
ENSE00002042355	73528413	73528533
ENSE00002056481	73509675	73509725
ENSE00002084952	73510203	73510343

Expression profiles

Bgee: expression breadth broad, 90 present calls, max score 98.27.

Top tissues by expression

197 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of liver	UBERON:0001114	98.27	gold quality
metanephros cortex	UBERON:0010533	93.51	gold quality
liver	UBERON:0002107	88.24	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.25	silver quality
cortex of kidney	UBERON:0001225	74.88	gold quality
kidney epithelium	UBERON:0004819	72.15	silver quality
adrenal tissue	UBERON:0018303	72.12	gold quality
adult mammalian kidney	UBERON:0000082	70.18	gold quality
pancreatic ductal cell	CL:0002079	69.70	silver quality
ileal mucosa	UBERON:0000331	67.04	silver quality
kidney	UBERON:0002113	67.04	gold quality
metanephros	UBERON:0000081	62.08	gold quality
tibialis anterior	UBERON:0001385	61.74	silver quality
secondary oocyte	CL:0000655	57.09	gold quality
myocardium	UBERON:0002349	56.67	gold quality
epithelial cell of pancreas	CL:0000083	55.83	gold quality
vermiform appendix	UBERON:0001154	55.59	gold quality
stomach	UBERON:0000945	55.17	gold quality
monocyte	CL:0000576	54.98	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.84	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
body of stomach	UBERON:0001161	53.81	gold quality
parotid gland	UBERON:0001831	53.74	gold quality
right atrium auricular region	UBERON:0006631	53.72	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
islet of Langerhans	UBERON:0000006	53.48	gold quality
body of pancreas	UBERON:0001150	53.45	gold quality
pancreas	UBERON:0001264	53.22	gold quality
cardiac atrium	UBERON:0002081	52.68	gold quality
descending thoracic aorta	UBERON:0002345	51.84	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.