LINC02501

Summary

LINC02501 (long intergenic non-protein coding RNA 2501, HGNC:53489) is a long non-coding RNA gene on chromosome 4p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53489
Approved symbol	LINC02501
Name	long intergenic non-protein coding RNA 2501
Location	4p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249882
Ensembl biotype	lncRNA
Entrez	105374565
RNAcentral	URS0000BC4557 — lncRNA, 561 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000510420, ENST00000655959, ENST00000658339, ENST00000758468, ENST00000758469

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000510420 — 3 exons

Exon	Start	End
ENSE00002024780	31558652	31558821
ENSE00002063596	31557499	31557594
ENSE00002067302	31506425	31506825

Expression profiles

Bgee: expression breadth ubiquitous, 111 present calls, max score 79.71.

Top tissues by expression

111 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.71	gold quality
bone marrow cell	CL:0002092	74.40	gold quality
left testis	UBERON:0004533	69.90	gold quality
testis	UBERON:0000473	69.80	gold quality
right testis	UBERON:0004534	68.34	gold quality
ventricular zone	UBERON:0003053	62.77	gold quality
bone marrow	UBERON:0002371	61.62	gold quality
stromal cell of endometrium	CL:0002255	58.22	gold quality
monocyte	CL:0000576	54.15	gold quality
lymph node	UBERON:0000029	52.82	gold quality
blood	UBERON:0000178	52.42	gold quality
duodenum	UBERON:0002114	52.06	gold quality
vermiform appendix	UBERON:0001154	51.73	gold quality
urinary bladder	UBERON:0001255	50.67	gold quality
liver	UBERON:0002107	49.31	silver quality
prefrontal cortex	UBERON:0000451	48.96	gold quality
islet of Langerhans	UBERON:0000006	48.70	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	48.55	gold quality
cerebellum	UBERON:0002037	48.09	gold quality
cerebellar cortex	UBERON:0002129	48.06	gold quality
cerebellar hemisphere	UBERON:0002245	48.05	gold quality
primary visual cortex	UBERON:0002436	47.81	silver quality
muscle of leg	UBERON:0001383	47.38	silver quality
right hemisphere of cerebellum	UBERON:0014890	47.06	silver quality
gall bladder	UBERON:0002110	47.04	gold quality
right lobe of liver	UBERON:0001114	46.95	silver quality
gastrocnemius	UBERON:0001388	46.86	silver quality
placenta	UBERON:0001987	46.64	gold quality
pancreas	UBERON:0001264	46.54	gold quality
multicellular organism	UBERON:0000468	46.16	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.