LINC02502

Summary

LINC02502 (long intergenic non-protein coding RNA 2502, HGNC:53491) is a long non-coding RNA gene on chromosome 4q27.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53491
Approved symbol	LINC02502
Name	long intergenic non-protein coding RNA 2502
Location	4q27
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000250392
Ensembl biotype	lncRNA
Entrez	100996694
RNAcentral	URS00004C4114 — lncRNA, 642 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 11 — 11 lncRNA

ENST00000505122, ENST00000773000, ENST00000773001, ENST00000773002, ENST00000773003, ENST00000773004, ENST00000773005, ENST00000773006, ENST00000773007, ENST00000773008, ENST00000773009

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505122 — 2 exons

Exon	Start	End
ENSE00004137591	119963788	119964298
ENSE00004137592	119939478	119939675

Expression profiles

Bgee: expression breadth broad, 83 present calls, max score 92.77.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0456 / max 20.9467, expressed in 13 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
49500	0.0260	9
49501	0.0135	9
49502	0.0061	3

Top tissues by expression

83 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
apex of heart	UBERON:0002098	92.77	gold quality
heart left ventricle	UBERON:0002084	89.35	gold quality
right atrium auricular region	UBERON:0006631	86.20	gold quality
heart	UBERON:0000948	85.70	gold quality
right testis	UBERON:0004534	77.24	gold quality
left testis	UBERON:0004533	76.41	gold quality
testis	UBERON:0000473	75.90	gold quality
hindlimb stylopod muscle	UBERON:0004252	72.24	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.78	gold quality
muscle of leg	UBERON:0001383	63.83	gold quality
gastrocnemius	UBERON:0001388	63.40	gold quality
skeletal muscle tissue	UBERON:0001134	62.96	gold quality
prefrontal cortex	UBERON:0000451	58.72	gold quality
multicellular organism	UBERON:0000468	58.23	gold quality
right coronary artery	UBERON:0001625	55.73	gold quality
gall bladder	UBERON:0002110	55.31	gold quality
lymph node	UBERON:0000029	55.19	gold quality
urinary bladder	UBERON:0001255	52.56	gold quality
ascending aorta	UBERON:0001496	52.04	gold quality
thoracic aorta	UBERON:0001515	51.81	gold quality
calcaneal tendon	UBERON:0003701	51.59	silver quality
endocervix	UBERON:0000458	50.88	gold quality
placenta	UBERON:0001987	50.26	gold quality
descending thoracic aorta	UBERON:0002345	49.41	gold quality
minor salivary gland	UBERON:0001830	48.83	gold quality
islet of Langerhans	UBERON:0000006	48.58	gold quality
monocyte	CL:0000576	48.18	silver quality
blood	UBERON:0000178	47.54	gold quality
tibial artery	UBERON:0007610	46.43	gold quality
popliteal artery	UBERON:0002250	46.38	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.