LINC02505

Summary

LINC02505 (long intergenic non-protein coding RNA 2505, HGNC:53494) is a long non-coding RNA gene on chromosome 4p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53494
Approved symbol	LINC02505
Name	long intergenic non-protein coding RNA 2505
Location	4p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248215
Ensembl biotype	lncRNA
Entrez	105374400
RNAcentral	URS0000327DBF — lncRNA, 776 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000505298, ENST00000510597, ENST00000515128, ENST00000655716, ENST00000662117, ENST00000733117, ENST00000733118, ENST00000733119, ENST00000733120, ENST00000733121, ENST00000733122, ENST00000733123

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505298 — 6 exons

Exon	Start	End
ENSE00002022482	36615418	36615526
ENSE00002050206	36584665	36584796
ENSE00002052192	36641850	36641900
ENSE00002074283	36582657	36582730
ENSE00002082144	36498427	36498488
ENSE00002086391	36496693	36497052

Expression profiles

Bgee: expression breadth broad, 85 present calls, max score 80.32.

Top tissues by expression

85 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.32	gold quality
sural nerve	UBERON:0015488	72.78	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.84	gold quality
hindlimb stylopod muscle	UBERON:0004252	64.84	gold quality
ventricular zone	UBERON:0003053	61.85	gold quality
bone marrow	UBERON:0002371	52.71	gold quality
leukocyte	CL:0000738	52.59	silver quality
monocyte	CL:0000576	51.83	silver quality
blood	UBERON:0000178	50.77	gold quality
islet of Langerhans	UBERON:0000006	49.88	gold quality
endometrium	UBERON:0001295	48.95	gold quality
placenta	UBERON:0001987	48.42	gold quality
prefrontal cortex	UBERON:0000451	48.12	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	48.10	gold quality
superior frontal gyrus	UBERON:0002661	48.06	gold quality
calcaneal tendon	UBERON:0003701	47.80	silver quality
gall bladder	UBERON:0002110	47.44	gold quality
pancreas	UBERON:0001264	47.17	gold quality
body of pancreas	UBERON:0001150	45.60	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	45.52	gold quality
adult mammalian kidney	UBERON:0000082	45.44	gold quality
gastrocnemius	UBERON:0001388	45.36	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.31	gold quality
right lobe of liver	UBERON:0001114	45.27	silver quality
myometrium	UBERON:0001296	44.76	gold quality
right atrium auricular region	UBERON:0006631	43.90	silver quality
cerebellar cortex	UBERON:0002129	43.65	silver quality
right hemisphere of cerebellum	UBERON:0014890	43.50	silver quality
cerebellar hemisphere	UBERON:0002245	43.34	silver quality
popliteal artery	UBERON:0002250	43.14	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.