LINC02506

Summary

LINC02506 (long intergenic non-protein coding RNA 2506, HGNC:53495) is a long non-coding RNA gene on chromosome 4p15.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53495
Approved symbol	LINC02506
Name	long intergenic non-protein coding RNA 2506
Location	4p15.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251129
Ensembl biotype	lncRNA
Entrez	102723828
RNAcentral	URS00007E4D85 — lncRNA, 752 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 40 — 40 lncRNA

ENST00000513211, ENST00000655951, ENST00000657576, ENST00000659613, ENST00000660373, ENST00000662669, ENST00000665582, ENST00000667252, ENST00000684849, ENST00000685407, ENST00000685455, ENST00000686730, ENST00000792196, ENST00000792197, ENST00000792198, ENST00000792199, ENST00000792200, ENST00000792201, ENST00000792202, ENST00000792203, ENST00000792204, ENST00000792205, ENST00000792206, ENST00000792207, ENST00000792208, ENST00000792209, ENST00000792210, ENST00000792211, ENST00000792212, ENST00000792213, ENST00000792214, ENST00000792215, ENST00000792216, ENST00000792217, ENST00000792218, ENST00000792219, ENST00000792220, ENST00000792221, ENST00000792222, ENST00000792223

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000513211 — 4 exons

Exon	Start	End
ENSE00002037762	32146053	32146267
ENSE00002072741	32155314	32155406
ENSE00004174009	32155639	32155859
ENSE00004174031	31997341	31997822

Expression profiles

Bgee: expression breadth ubiquitous, 115 present calls, max score 86.17.

FANTOM5 (CAGE): breadth broad, TPM avg 4.4736 / max 379.3003, expressed in 393 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
47259	4.4736	393

Top tissues by expression

115 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.17	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.83	gold quality
colonic epithelium	UBERON:0000397	69.56	gold quality
sural nerve	UBERON:0015488	67.15	silver quality
bone marrow	UBERON:0002371	66.30	gold quality
right lobe of liver	UBERON:0001114	63.96	gold quality
bone marrow cell	CL:0002092	63.72	silver quality
liver	UBERON:0002107	63.23	gold quality
ganglionic eminence	UBERON:0004023	63.04	gold quality
ventricular zone	UBERON:0003053	62.25	gold quality
heart left ventricle	UBERON:0002084	61.88	gold quality
heart	UBERON:0000948	59.05	gold quality
monocyte	CL:0000576	58.77	gold quality
blood	UBERON:0000178	58.49	gold quality
leukocyte	CL:0000738	57.72	gold quality
muscle tissue	UBERON:0002385	56.41	gold quality
vagina	UBERON:0000996	55.99	gold quality
right atrium auricular region	UBERON:0006631	55.65	gold quality
anterior cingulate cortex	UBERON:0009835	52.16	gold quality
corpus callosum	UBERON:0002336	52.10	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	52.08	gold quality
apex of heart	UBERON:0002098	51.49	gold quality
lymph node	UBERON:0000029	51.31	gold quality
endometrium	UBERON:0001295	50.90	gold quality
fallopian tube	UBERON:0003889	50.53	gold quality
amygdala	UBERON:0001876	50.44	gold quality
placenta	UBERON:0001987	50.28	gold quality
islet of Langerhans	UBERON:0000006	49.68	gold quality
vermiform appendix	UBERON:0001154	49.57	gold quality
body of pancreas	UBERON:0001150	49.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.