LINC02508

Summary

LINC02508 (long intergenic non-protein coding RNA 2508, HGNC:53497) is a long non-coding RNA gene on chromosome 4q35.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53497
Approved symbol	LINC02508
Name	long intergenic non-protein coding RNA 2508
Location	4q35.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000251619
Ensembl biotype	lncRNA
Entrez	105377610
RNAcentral	URS00004C259B — lncRNA, 426 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 16 — 16 lncRNA

ENST00000504165, ENST00000505178, ENST00000717494, ENST00000717495, ENST00000717496, ENST00000717497, ENST00000717498, ENST00000745304, ENST00000745305, ENST00000745306, ENST00000745307, ENST00000745308, ENST00000745309, ENST00000745310, ENST00000745311, ENST00000850664

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504165 — 3 exons

Exon	Start	End
ENSE00004032666	188783913	188784011
ENSE00004085111	188776554	188776767
ENSE00004085121	188785296	188785733

Expression profiles

Bgee: expression breadth broad, 52 present calls, max score 86.10.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0085 / max 6.7663, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
50951	0.0085	4

Top tissues by expression

52 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.10	silver quality
left testis	UBERON:0004533	71.23	gold quality
right testis	UBERON:0004534	70.98	gold quality
testis	UBERON:0000473	70.83	gold quality
monocyte	CL:0000576	60.08	gold quality
multicellular organism	UBERON:0000468	57.22	gold quality
islet of Langerhans	UBERON:0000006	55.01	gold quality
calcaneal tendon	UBERON:0003701	54.97	gold quality
blood	UBERON:0000178	53.89	gold quality
cortex of kidney	UBERON:0001225	52.40	gold quality
tibial artery	UBERON:0007610	50.01	gold quality
heart left ventricle	UBERON:0002084	49.71	gold quality
gastrocnemius	UBERON:0001388	48.52	gold quality
esophagus mucosa	UBERON:0002469	47.72	gold quality
thoracic aorta	UBERON:0001515	47.29	gold quality
body of stomach	UBERON:0001161	46.82	gold quality
right lobe of thyroid gland	UBERON:0001119	46.62	gold quality
ascending aorta	UBERON:0001496	46.33	gold quality
nucleus accumbens	UBERON:0001882	45.76	gold quality
anterior cingulate cortex	UBERON:0009835	45.59	gold quality
adult mammalian kidney	UBERON:0000082	45.50	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	44.24	gold quality
tibial nerve	UBERON:0001323	43.73	gold quality
substantia nigra	UBERON:0002038	43.61	gold quality
omental fat pad	UBERON:0010414	43.60	gold quality
right hemisphere of cerebellum	UBERON:0014890	43.46	silver quality
subcutaneous adipose tissue	UBERON:0002190	43.38	gold quality
zone of skin	UBERON:0000014	43.25	gold quality
lower esophagus	UBERON:0013473	43.25	gold quality
cerebral cortex	UBERON:0000956	42.90	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.