LINC02511

Summary

LINC02511 (long intergenic non-protein coding RNA 2511, HGNC:53500) is a long non-coding RNA gene on chromosome 4q28.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53500
Approved symbol	LINC02511
Name	long intergenic non-protein coding RNA 2511
Location	4q28.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000248869
Ensembl biotype	lncRNA
Entrez	105377441
RNAcentral	URS0000BC448E — lncRNA, 2488 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000505736, ENST00000512039, ENST00000652184, ENST00000656187, ENST00000656956, ENST00000669794

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000505736 — 4 exons

Exon	Start	End
ENSE00002027606	137212737	137212799
ENSE00002037149	137089561	137089600
ENSE00002083114	136916175	136916226
ENSE00002085211	136796722	136798234

Expression profiles

Bgee: expression breadth ubiquitous, 143 present calls, max score 81.56.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0410 / max 48.4755, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
53970	0.0410	9

Top tissues by expression

235 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.56	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	73.64	silver quality
colonic epithelium	UBERON:0000397	72.14	gold quality
calcaneal tendon	UBERON:0003701	66.63	gold quality
ganglionic eminence	UBERON:0004023	63.45	gold quality
metanephros cortex	UBERON:0010533	58.85	gold quality
subcutaneous adipose tissue	UBERON:0002190	58.48	gold quality
leukocyte	CL:0000738	57.16	gold quality
monocyte	CL:0000576	56.79	gold quality
tendon	UBERON:0000043	56.64	gold quality
stromal cell of endometrium	CL:0002255	56.50	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.21	gold quality
mucosa of transverse colon	UBERON:0004991	54.03	gold quality
adrenal tissue	UBERON:0018303	53.76	gold quality
endothelial cell	CL:0000115	53.18	gold quality
right coronary artery	UBERON:0001625	53.13	gold quality
left uterine tube	UBERON:0001303	53.07	gold quality
lower lobe of lung	UBERON:0008949	53.03	silver quality
corpus callosum	UBERON:0002336	52.94	gold quality
omental fat pad	UBERON:0010414	52.92	gold quality
peritoneum	UBERON:0002358	52.88	gold quality
tibial nerve	UBERON:0001323	52.82	gold quality
adipose tissue	UBERON:0001013	52.81	gold quality
muscle of leg	UBERON:0001383	52.79	gold quality
islet of Langerhans	UBERON:0000006	52.54	gold quality
vermiform appendix	UBERON:0001154	52.36	gold quality
adipose tissue of abdominal region	UBERON:0007808	52.17	gold quality
smooth muscle tissue	UBERON:0001135	51.84	gold quality
tibial artery	UBERON:0007610	51.79	gold quality
popliteal artery	UBERON:0002250	51.77	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.72

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.