LINC02516

Summary

LINC02516 (long intergenic non-protein coding RNA 2516, HGNC:53505) is a long non-coding RNA gene on chromosome 4q28.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53505
Approved symbol	LINC02516
Name	long intergenic non-protein coding RNA 2516
Location	4q28.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261083
Ensembl biotype	lncRNA
Entrez	101927087
RNAcentral	URS0000142054 — lncRNA, 1771 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000563724, ENST00000651887, ENST00000657976, ENST00000659179, ENST00000843619, ENST00000843620, ENST00000843621

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563724 — 9 exons

Exon	Start	End
ENSE00002579541	124520561	124520756
ENSE00002586833	124540326	124540385
ENSE00002591054	124534220	124534248
ENSE00002599704	124522107	124522204
ENSE00002600455	124499942	124500994
ENSE00002606455	124504250	124504410
ENSE00002608700	124543667	124543710
ENSE00002615235	124556436	124556510
ENSE00002626944	124558380	124558434

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 91.22.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.22	gold quality
calcaneal tendon	UBERON:0003701	67.34	gold quality
sural nerve	UBERON:0015488	67.34	gold quality
corpus callosum	UBERON:0002336	63.05	gold quality
colonic epithelium	UBERON:0000397	62.59	silver quality
prefrontal cortex	UBERON:0000451	60.68	gold quality
ganglionic eminence	UBERON:0004023	58.94	gold quality
lower esophagus mucosa	UBERON:0035834	57.47	gold quality
right lobe of liver	UBERON:0001114	55.12	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.47	silver quality
adrenal tissue	UBERON:0018303	54.44	gold quality
monocyte	CL:0000576	54.43	gold quality
liver	UBERON:0002107	53.67	gold quality
Brodmann (1909) area 9	UBERON:0013540	53.51	gold quality
tibial nerve	UBERON:0001323	53.36	gold quality
muscle of leg	UBERON:0001383	53.25	gold quality
cerebellar hemisphere	UBERON:0002245	52.46	gold quality
skeletal muscle tissue	UBERON:0001134	52.43	silver quality
stromal cell of endometrium	CL:0002255	51.87	silver quality
endometrium	UBERON:0001295	51.10	silver quality
popliteal artery	UBERON:0002250	50.94	gold quality
tibial artery	UBERON:0007610	50.94	gold quality
lymph node	UBERON:0000029	50.16	gold quality
muscle tissue	UBERON:0002385	49.65	gold quality
esophagus mucosa	UBERON:0002469	49.55	gold quality
right coronary artery	UBERON:0001625	49.13	gold quality
lung	UBERON:0002048	49.07	gold quality
left coronary artery	UBERON:0001626	49.04	gold quality
fundus of stomach	UBERON:0001160	48.77	gold quality
blood	UBERON:0000178	48.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.59

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.