LINC02520

Summary

LINC02520 (long intergenic non-protein coding RNA 2520, HGNC:53511) is a long non-coding RNA gene on chromosome 6p21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53511
Approved symbol	LINC02520
Name	long intergenic non-protein coding RNA 2520
Location	6p21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000204110
Ensembl biotype	lncRNA
Entrez	100505530
RNAcentral	URS00007E386E — lncRNA, 1201 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000414875, ENST00000570443, ENST00000656831, ENST00000689244, ENST00000690655, ENST00000829675, ENST00000829676, ENST00000829677, ENST00000831050

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414875 — 5 exons

Exon	Start	End
ENSE00001614320	37550568	37550860
ENSE00001651931	37549978	37550152
ENSE00002649123	37546155	37546245
ENSE00002655441	37545145	37545413
ENSE00002668644	37549046	37549215

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 74.95.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0538 / max 22.1307, expressed in 18 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
67646	0.0538	18

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.95	gold quality
lymph node	UBERON:0000029	71.46	gold quality
ganglionic eminence	UBERON:0004023	68.37	gold quality
duodenum	UBERON:0002114	67.35	gold quality
leukocyte	CL:0000738	67.27	gold quality
tonsil	UBERON:0002372	65.12	gold quality
blood	UBERON:0000178	62.26	gold quality
vermiform appendix	UBERON:0001154	62.18	gold quality
bone marrow cell	CL:0002092	60.69	silver quality
urinary bladder	UBERON:0001255	58.48	gold quality
granulocyte	CL:0000094	57.47	gold quality
islet of Langerhans	UBERON:0000006	55.94	gold quality
small intestine	UBERON:0002108	55.83	gold quality
gall bladder	UBERON:0002110	55.29	gold quality
liver	UBERON:0002107	53.66	gold quality
small intestine Peyer’s patch	UBERON:0003454	53.63	gold quality
prefrontal cortex	UBERON:0000451	53.52	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.47	gold quality
substantia nigra	UBERON:0002038	53.39	gold quality
cortex of kidney	UBERON:0001225	52.37	gold quality
muscle of leg	UBERON:0001383	52.22	gold quality
right lobe of liver	UBERON:0001114	52.15	gold quality
smooth muscle tissue	UBERON:0001135	51.90	gold quality
superior frontal gyrus	UBERON:0002661	51.54	gold quality
spleen	UBERON:0002106	51.44	gold quality
kidney	UBERON:0002113	50.97	gold quality
fallopian tube	UBERON:0003889	50.82	gold quality
adult mammalian kidney	UBERON:0000082	50.59	gold quality
intestine	UBERON:0000160	50.54	gold quality
hypothalamus	UBERON:0001898	50.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.93

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.