LINC02533

Summary

LINC02533 (long intergenic non-protein coding RNA 2533, HGNC:53566) is a long non-coding RNA gene on chromosome 6p25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53566
Approved symbol	LINC02533
Name	long intergenic non-protein coding RNA 2533
Location	6p25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000260239
Ensembl biotype	lncRNA
Entrez	105374895
RNAcentral	URS0000BC4576 — lncRNA, 2600 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 33 — 33 lncRNA

ENST00000563079, ENST00000673975, ENST00000674020, ENST00000827245, ENST00000827246, ENST00000827247, ENST00000827248, ENST00000827249, ENST00000827250, ENST00000827251, ENST00000827252, ENST00000827253, ENST00000827254, ENST00000827255, ENST00000827256, ENST00000827257, ENST00000827258, ENST00000827259, ENST00000827260, ENST00000827261, ENST00000827262, ENST00000827263, ENST00000827264, ENST00000827265, ENST00000827266, ENST00000827267, ENST00000827268, ENST00000827269, ENST00000827270, ENST00000827271, ENST00000827272, ENST00000827273, ENST00000827274

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000563079 — 2 exons

Exon	Start	End
ENSE00004238966	4493882	4495769
ENSE00004238983	4491803	4492190

Expression profiles

Bgee: expression breadth broad, 43 present calls, max score 70.77.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0126 / max 9.0302, expressed in 6 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
65567	0.0126	6

Top tissues by expression

160 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
bone marrow cell	CL:0002092	70.77	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	66.28	gold quality
placenta	UBERON:0001987	56.76	gold quality
monocyte	CL:0000576	54.35	silver quality
amniotic fluid	UBERON:0000173	53.23	gold quality
gastrocnemius	UBERON:0001388	47.60	gold quality
lymph node	UBERON:0000029	47.06	gold quality
islet of Langerhans	UBERON:0000006	46.79	gold quality
cerebellar vermis	UBERON:0004720	46.54	gold quality
skin of abdomen	UBERON:0001416	46.05	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	45.84	gold quality
left adrenal gland	UBERON:0001234	45.13	gold quality
Brodmann (1909) area 9	UBERON:0013540	45.08	silver quality
prefrontal cortex	UBERON:0000451	45.03	silver quality
tibial artery	UBERON:0007610	44.55	silver quality
pancreas	UBERON:0001264	44.51	silver quality
female reproductive system	UBERON:0000474	43.69	gold quality
body of stomach	UBERON:0001161	43.44	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
cortex of kidney	UBERON:0001225	43.30	gold quality
esophagus	UBERON:0001043	42.79	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
tonsil	UBERON:0002372	42.25	gold quality
lower esophagus muscularis layer	UBERON:0035833	42.23	silver quality
thymus	UBERON:0002370	42.11	gold quality
esophagus mucosa	UBERON:0002469	42.10	silver quality
skin of leg	UBERON:0001511	42.08	gold quality
quadriceps femoris	UBERON:0001377	41.99	gold quality
liver	UBERON:0002107	41.96	gold quality
adrenal gland	UBERON:0002369	41.78	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.