LINC02541

Summary

LINC02541 (long intergenic non-protein coding RNA 2541, HGNC:53574) is a long non-coding RNA gene on chromosome 6q21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53574
Approved symbol	LINC02541
Name	long intergenic non-protein coding RNA 2541
Location	6q21
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-367G18.1
Ensembl gene	ENSG00000230943
Ensembl biotype	lncRNA
Entrez	101927686
RNAcentral	URS00007E3C80 — lncRNA, 328 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 40 — 40 lncRNA

ENST00000427157, ENST00000452675, ENST00000649523, ENST00000654213, ENST00000657627, ENST00000701104, ENST00000788883, ENST00000788884, ENST00000788885, ENST00000788886, ENST00000788887, ENST00000788888, ENST00000788889, ENST00000788890, ENST00000788891, ENST00000788892, ENST00000788893, ENST00000788894, ENST00000788895, ENST00000788896, ENST00000788897, ENST00000788898, ENST00000788899, ENST00000788900, ENST00000788901, ENST00000788902, ENST00000788903, ENST00000788904, ENST00000788905, ENST00000788906, ENST00000788907, ENST00000788908, ENST00000788909, ENST00000788910, ENST00000788911, ENST00000788912, ENST00000788913, ENST00000788914, ENST00000788915, ENST00000788916

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427157 — 3 exons

Exon	Start	End
ENSE00001622529	113650015	113650074
ENSE00001680730	113623535	113623646
ENSE00001761471	113627521	113627675

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 89.86.

FANTOM5 (CAGE): breadth broad, TPM avg 1.4292 / max 84.2131, expressed in 370 samples.

FANTOM5 promoters (9 alternative TSS)

Promoter ID	TPM avg	Samples expressed
75184	0.4379	61
75188	0.3850	166
75187	0.3114	131
75186	0.0911	41
75203	0.0710	27
75189	0.0510	22
75202	0.0377	22
75185	0.0301	9
75201	0.0138	8

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
skeletal muscle tissue	UBERON:0001134	89.86	gold quality
hindlimb stylopod muscle	UBERON:0004252	89.77	gold quality
muscle of leg	UBERON:0001383	86.35	gold quality
gastrocnemius	UBERON:0001388	85.36	gold quality
muscle tissue	UBERON:0002385	84.57	gold quality
skin of abdomen	UBERON:0001416	83.06	gold quality
zone of skin	UBERON:0000014	81.12	gold quality
skin of leg	UBERON:0001511	79.55	gold quality
bone marrow cell	CL:0002092	77.92	gold quality
esophagus mucosa	UBERON:0002469	75.32	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	73.68	gold quality
vagina	UBERON:0000996	72.17	gold quality
rectum	UBERON:0001052	72.11	gold quality
bone marrow	UBERON:0002371	72.06	gold quality
urinary bladder	UBERON:0001255	70.16	gold quality
lower esophagus mucosa	UBERON:0035834	69.58	gold quality
spleen	UBERON:0002106	69.37	gold quality
esophagus	UBERON:0001043	69.24	gold quality
tonsil	UBERON:0002372	68.91	gold quality
prostate gland	UBERON:0002367	67.90	gold quality
granulocyte	CL:0000094	65.64	gold quality
lymph node	UBERON:0000029	65.29	gold quality
ectocervix	UBERON:0012249	64.93	gold quality
leukocyte	CL:0000738	63.77	gold quality
monocyte	CL:0000576	63.57	gold quality
islet of Langerhans	UBERON:0000006	62.51	gold quality
pancreas	UBERON:0001264	62.46	gold quality
liver	UBERON:0002107	62.40	gold quality
body of pancreas	UBERON:0001150	62.37	gold quality
vermiform appendix	UBERON:0001154	61.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.