LINC02546

Summary

LINC02546 (long intergenic non-protein coding RNA 2546, HGNC:53581) is a long non-coding RNA gene on chromosome 11p14.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53581
Approved symbol	LINC02546
Name	long intergenic non-protein coding RNA 2546
Location	11p14.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255117
Ensembl biotype	lncRNA
Entrez	105376606
RNAcentral	URS0000BC454E — lncRNA, 813 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000527492, ENST00000528119, ENST00000656808, ENST00000656975, ENST00000657882, ENST00000658163, ENST00000658603, ENST00000659062, ENST00000659640, ENST00000660023, ENST00000660254, ENST00000661544, ENST00000742805, ENST00000742806

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000527492 — 3 exons

Exon	Start	End
ENSE00002155767	29596806	29596851
ENSE00002168019	29630364	29630680
ENSE00003860414	29594588	29594966

Expression profiles

Bgee: expression breadth broad, 47 present calls, max score 86.40.

Top tissues by expression

183 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
anterior cingulate cortex	UBERON:0009835	86.40	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.10	gold quality
sperm	CL:0000019	85.42	gold quality
pancreatic ductal cell	CL:0002079	75.26	silver quality
buccal mucosa cell	CL:0002336	72.09	silver quality
epithelial cell of pancreas	CL:0000083	67.50	gold quality
left testis	UBERON:0004533	64.24	gold quality
tibialis anterior	UBERON:0001385	63.22	silver quality
testis	UBERON:0000473	62.21	gold quality
right testis	UBERON:0004534	59.94	gold quality
oocyte	CL:0000023	55.64	gold quality
islet of Langerhans	UBERON:0000006	54.79	gold quality
gastrocnemius	UBERON:0001388	54.76	gold quality
monocyte	CL:0000576	54.49	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
deltoid	UBERON:0001476	54.19	silver quality
kidney epithelium	UBERON:0004819	53.93	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
ileal mucosa	UBERON:0000331	52.16	silver quality
cardiac atrium	UBERON:0002081	51.83	gold quality
cerebellar vermis	UBERON:0004720	51.01	gold quality
myocardium	UBERON:0002349	50.25	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	49.89	silver quality
tibial nerve	UBERON:0001323	49.68	gold quality
quadriceps femoris	UBERON:0001377	47.76	gold quality
adult organism	UBERON:0007023	47.72	gold quality
left adrenal gland cortex	UBERON:0035825	47.39	gold quality
lower lobe of lung	UBERON:0008949	47.09	silver quality
nasal cavity epithelium	UBERON:0005384	47.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.