LINC02547

Summary

LINC02547 (long intergenic non-protein coding RNA 2547, HGNC:53582) is a long non-coding RNA gene on chromosome 11p15.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53582
Approved symbol	LINC02547
Name	long intergenic non-protein coding RNA 2547
Location	11p15.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000254486
Ensembl biotype	lncRNA
Entrez	105376554
RNAcentral	URS00000CF9B3 — lncRNA, 3308 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000531559

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000531559 — 2 exons

Exon	Start	End
ENSE00002171269	12030875	12030930
ENSE00002186380	12058534	12061785

Expression profiles

Bgee: expression breadth broad, 29 present calls, max score 72.02.

Top tissues by expression

29 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	72.02	gold quality
thoracic mammary gland	UBERON:0005200	60.18	silver quality
prefrontal cortex	UBERON:0000451	51.96	silver quality
stromal cell of endometrium	CL:0002255	51.85	silver quality
blood	UBERON:0000178	49.86	silver quality
urinary bladder	UBERON:0001255	48.55	silver quality
tibial nerve	UBERON:0001323	48.21	gold quality
liver	UBERON:0002107	47.44	silver quality
islet of Langerhans	UBERON:0000006	46.93	silver quality
lung	UBERON:0002048	46.46	silver quality
right lobe of liver	UBERON:0001114	46.45	silver quality
caudate nucleus	UBERON:0001873	45.68	silver quality
placenta	UBERON:0001987	45.68	silver quality
heart left ventricle	UBERON:0002084	44.60	silver quality
heart	UBERON:0000948	44.49	gold quality
cerebellar hemisphere	UBERON:0002245	44.36	silver quality
gastrocnemius	UBERON:0001388	44.26	silver quality
right frontal lobe	UBERON:0002810	44.02	gold quality
right atrium auricular region	UBERON:0006631	43.76	gold quality
right hemisphere of cerebellum	UBERON:0014890	42.45	silver quality
adult mammalian kidney	UBERON:0000082	41.59	silver quality
body of stomach	UBERON:0001161	41.07	silver quality
skin of abdomen	UBERON:0001416	40.25	silver quality
skin of leg	UBERON:0001511	38.94	silver quality
muscle layer of sigmoid colon	UBERON:0035805	38.10	silver quality
left adrenal gland	UBERON:0001234	38.01	silver quality
esophagus mucosa	UBERON:0002469	37.94	silver quality
vagina	UBERON:0000996	36.26	silver quality
Ammon’s horn	UBERON:0001954	34.00	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.