LINC02548

Summary

LINC02548 (long intergenic non-protein coding RNA 2548, HGNC:53583) is a long non-coding RNA gene on chromosome 11p15.3-p15.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53583
Approved symbol	LINC02548
Name	long intergenic non-protein coding RNA 2548
Location	11p15.3-p15.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000255411
Ensembl biotype	lncRNA
Entrez	105376562
RNAcentral	URS0000BC461F — lncRNA, 496 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000531749, ENST00000648524, ENST00000655374, ENST00000655777, ENST00000657797, ENST00000659648, ENST00000664710, ENST00000668428, ENST00000732951, ENST00000732952

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000531749 — 3 exons

Exon	Start	End
ENSE00002168927	13785990	13786113
ENSE00002191727	13847707	13848002
ENSE00002192755	13785390	13785453

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 81.63.

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.63	gold quality
liver	UBERON:0002107	74.80	gold quality
uterine cervix	UBERON:0000002	68.22	silver quality
small intestine	UBERON:0002108	64.81	silver quality
cortical plate	UBERON:0005343	63.35	gold quality
bone marrow cell	CL:0002092	63.31	silver quality
kidney	UBERON:0002113	61.77	gold quality
colonic epithelium	UBERON:0000397	61.10	silver quality
stromal cell of endometrium	CL:0002255	60.45	gold quality
thoracic mammary gland	UBERON:0005200	60.12	silver quality
tonsil	UBERON:0002372	60.03	silver quality
ganglionic eminence	UBERON:0004023	59.91	gold quality
ventricular zone	UBERON:0003053	58.89	silver quality
prostate gland	UBERON:0002367	58.02	silver quality
endometrium	UBERON:0001295	57.87	gold quality
stomach	UBERON:0000945	56.62	gold quality
monocyte	CL:0000576	56.20	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.57	silver quality
thyroid gland	UBERON:0002046	55.12	silver quality
pancreas	UBERON:0001264	53.49	gold quality
superior frontal gyrus	UBERON:0002661	53.49	gold quality
primary visual cortex	UBERON:0002436	52.70	gold quality
prefrontal cortex	UBERON:0000451	52.48	gold quality
islet of Langerhans	UBERON:0000006	52.43	gold quality
myometrium	UBERON:0001296	51.50	gold quality
lung	UBERON:0002048	51.05	silver quality
blood	UBERON:0000178	50.78	gold quality
heart	UBERON:0000948	50.69	gold quality
ovary	UBERON:0000992	50.59	silver quality
lymph node	UBERON:0000029	50.25	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.