LINC02549

Summary

LINC02549 (long intergenic non-protein coding RNA 2549, HGNC:53584) is a long non-coding RNA gene on chromosome 6q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53584
Approved symbol	LINC02549
Name	long intergenic non-protein coding RNA 2549
Location	6q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226497
Ensembl biotype	lncRNA
Entrez	101928280
RNAcentral	URS00007E490F — lncRNA, 676 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000445346

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445346 — 4 exons

Exon	Start	End
ENSE00001603267	68226972	68227292
ENSE00001609394	68329791	68329899
ENSE00001610761	68326945	68327072
ENSE00001906725	68266500	68266615

Expression profiles

Bgee: expression breadth broad, 57 present calls, max score 87.92.

Top tissues by expression

169 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.92	gold quality
ventricular zone	UBERON:0003053	71.13	gold quality
ganglionic eminence	UBERON:0004023	62.66	gold quality
monocyte	CL:0000576	58.62	gold quality
buccal mucosa cell	CL:0002336	56.80	gold quality
islet of Langerhans	UBERON:0000006	55.52	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.19	silver quality
adenohypophysis	UBERON:0002196	51.76	gold quality
prefrontal cortex	UBERON:0000451	50.49	gold quality
right testis	UBERON:0004534	49.63	gold quality
muscle of leg	UBERON:0001383	47.27	silver quality
gastrocnemius	UBERON:0001388	45.99	silver quality
smooth muscle tissue	UBERON:0001135	45.86	gold quality
cerebellar hemisphere	UBERON:0002245	45.39	silver quality
cerebellar cortex	UBERON:0002129	45.29	silver quality
testis	UBERON:0000473	44.85	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	44.81	gold quality
tibial artery	UBERON:0007610	44.37	silver quality
right hemisphere of cerebellum	UBERON:0014890	44.25	silver quality
spinal cord	UBERON:0002240	44.05	gold quality
popliteal artery	UBERON:0002250	44.04	silver quality
ectocervix	UBERON:0012249	43.84	gold quality
Brodmann (1909) area 9	UBERON:0013540	43.80	silver quality
left testis	UBERON:0004533	43.73	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
upper leg skin	UBERON:0004262	42.81	silver quality
upper lobe of lung	UBERON:0008948	42.63	silver quality
lower lobe of lung	UBERON:0008949	42.59	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
left adrenal gland	UBERON:0001234	42.45	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.