LINC02550

Summary

LINC02550 (long intergenic non-protein coding RNA 2550, HGNC:53585) is a long non-coding RNA gene on chromosome 11q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53585
Approved symbol	LINC02550
Name	long intergenic non-protein coding RNA 2550
Location	11q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271584
Ensembl biotype	lncRNA
Entrez	105369490
RNAcentral	URS0000BC44DA — lncRNA, 469 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000603154, ENST00000636877, ENST00000720606, ENST00000720607, ENST00000720608, ENST00000720609, ENST00000720610, ENST00000720611, ENST00000783536, ENST00000783537, ENST00000783538, ENST00000783539, ENST00000783540

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000603154 — 2 exons

Exon	Start	End
ENSE00004157667	111097230	111097403
ENSE00004157671	111091924	111092311

Expression profiles

Bgee: expression breadth ubiquitous, 125 present calls, max score 85.40.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1409 / max 27.0525, expressed in 57 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
122212	0.1409	57

Top tissues by expression

125 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	85.40	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.20	gold quality
gall bladder	UBERON:0002110	78.62	gold quality
sural nerve	UBERON:0015488	72.16	gold quality
testis	UBERON:0000473	71.82	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	71.44	gold quality
left testis	UBERON:0004533	71.33	gold quality
stromal cell of endometrium	CL:0002255	71.26	gold quality
right testis	UBERON:0004534	70.47	gold quality
ventricular zone	UBERON:0003053	68.98	gold quality
muscle tissue	UBERON:0002385	68.06	gold quality
smooth muscle tissue	UBERON:0001135	66.69	gold quality
ganglionic eminence	UBERON:0004023	66.03	gold quality
omental fat pad	UBERON:0010414	63.80	gold quality
urinary bladder	UBERON:0001255	63.70	gold quality
ectocervix	UBERON:0012249	63.59	gold quality
myometrium	UBERON:0001296	62.62	gold quality
placenta	UBERON:0001987	62.55	gold quality
lymph node	UBERON:0000029	62.44	gold quality
ovary	UBERON:0000992	62.14	gold quality
left ovary	UBERON:0002119	61.56	gold quality
endometrium	UBERON:0001295	61.09	gold quality
islet of Langerhans	UBERON:0000006	61.01	gold quality
tibial artery	UBERON:0007610	60.99	gold quality
popliteal artery	UBERON:0002250	60.96	gold quality
right ovary	UBERON:0002118	60.92	gold quality
left coronary artery	UBERON:0001626	60.89	gold quality
right coronary artery	UBERON:0001625	60.42	gold quality
left uterine tube	UBERON:0001303	60.33	gold quality
mucosa of transverse colon	UBERON:0004991	60.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.89

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.