LINC02554

Summary

LINC02554 (long intergenic non-protein coding RNA 2554, HGNC:53594) is a long non-coding RNA gene on chromosome 22q12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53594
Approved symbol	LINC02554
Name	long intergenic non-protein coding RNA 2554
Location	22q12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226741
Ensembl biotype	lncRNA
Entrez	100507657
RNAcentral	URS0000A7675D — lncRNA, 5436 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000426467, ENST00000657960, ENST00000662296, ENST00000665304, ENST00000836529, ENST00000836530

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426467 — 2 exons

Exon	Start	End
ENSE00001630826	27310651	27315049
ENSE00001766674	27316804	27317456

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 83.75.

Top tissues by expression

68 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.75	gold quality
sural nerve	UBERON:0015488	71.15	gold quality
cortical plate	UBERON:0005343	63.16	gold quality
ganglionic eminence	UBERON:0004023	61.11	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.56	gold quality
liver	UBERON:0002107	54.52	gold quality
left testis	UBERON:0004533	52.63	gold quality
testis	UBERON:0000473	52.40	gold quality
calcaneal tendon	UBERON:0003701	52.13	gold quality
kidney	UBERON:0002113	52.07	gold quality
adult mammalian kidney	UBERON:0000082	51.46	gold quality
stomach	UBERON:0000945	51.39	gold quality
cortex of kidney	UBERON:0001225	51.39	gold quality
monocyte	CL:0000576	51.37	silver quality
blood	UBERON:0000178	51.35	silver quality
islet of Langerhans	UBERON:0000006	49.98	gold quality
right testis	UBERON:0004534	49.83	gold quality
gall bladder	UBERON:0002110	49.71	gold quality
duodenum	UBERON:0002114	49.24	gold quality
prefrontal cortex	UBERON:0000451	48.77	silver quality
muscle of leg	UBERON:0001383	48.07	silver quality
lymph node	UBERON:0000029	47.52	silver quality
cerebellar cortex	UBERON:0002129	47.20	silver quality
multicellular organism	UBERON:0000468	46.70	gold quality
tibial nerve	UBERON:0001323	46.62	gold quality
heart left ventricle	UBERON:0002084	46.29	gold quality
gastrocnemius	UBERON:0001388	45.79	silver quality
transverse colon	UBERON:0001157	45.53	gold quality
colon	UBERON:0001155	45.39	gold quality
corpus callosum	UBERON:0002336	45.26	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.