LINC02558

Summary

LINC02558 (long intergenic non-protein coding RNA 2558, HGNC:53597) is a long non-coding RNA gene on chromosome 22q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53597
Approved symbol	LINC02558
Name	long intergenic non-protein coding RNA 2558
Location	22q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230866
Ensembl biotype	lncRNA
Entrez	105372999
RNAcentral	URS0000BC44B7 — lncRNA, 499 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000416995, ENST00000436395, ENST00000658411, ENST00000745875, ENST00000745876, ENST00000745877, ENST00000745878

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000416995 — 6 exons

Exon	Start	End
ENSE00001591837	31973387	31973474
ENSE00003861575	31988082	31988179
ENSE00003871448	31976624	31976737
ENSE00003876632	31981272	31981405
ENSE00004086172	32006827	32006888
ENSE00004086179	31970823	31970912

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 84.40.

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.40	gold quality
hindlimb stylopod muscle	UBERON:0004252	75.96	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	75.93	gold quality
ventricular zone	UBERON:0003053	68.89	gold quality
gall bladder	UBERON:0002110	63.99	gold quality
vermiform appendix	UBERON:0001154	62.37	gold quality
right testis	UBERON:0004534	61.51	gold quality
monocyte	CL:0000576	61.30	gold quality
bone marrow	UBERON:0002371	61.26	gold quality
ganglionic eminence	UBERON:0004023	61.12	gold quality
leukocyte	CL:0000738	60.91	gold quality
testis	UBERON:0000473	60.91	gold quality
primary visual cortex	UBERON:0002436	60.34	gold quality
cortical plate	UBERON:0005343	59.96	gold quality
calcaneal tendon	UBERON:0003701	59.43	gold quality
blood	UBERON:0000178	59.11	gold quality
left testis	UBERON:0004533	58.98	gold quality
muscle tissue	UBERON:0002385	57.75	gold quality
corpus callosum	UBERON:0002336	57.06	gold quality
stromal cell of endometrium	CL:0002255	57.01	gold quality
liver	UBERON:0002107	55.31	gold quality
islet of Langerhans	UBERON:0000006	54.51	gold quality
urinary bladder	UBERON:0001255	54.07	gold quality
lymph node	UBERON:0000029	54.01	gold quality
skeletal muscle tissue	UBERON:0001134	53.75	silver quality
right adrenal gland cortex	UBERON:0035827	53.55	gold quality
muscle of leg	UBERON:0001383	53.52	gold quality
duodenum	UBERON:0002114	53.47	gold quality
pancreas	UBERON:0001264	53.01	gold quality
muscle layer of sigmoid colon	UBERON:0035805	52.64	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.48

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.