LINC02560

Summary

LINC02560 (long intergenic non-protein coding RNA 2560, HGNC:53600) is a long non-coding RNA gene on chromosome 19q13.43.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53600
Approved symbol	LINC02560
Name	long intergenic non-protein coding RNA 2560
Location	19q13.43
Locus type	RNA, long non-coding
Status	Approved
Aliases	CTD-2619J13.13
Ensembl gene	ENSG00000268307
Ensembl biotype	lncRNA
Entrez	110806301
RNAcentral	URS0000BC43DD — lncRNA, 477 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000596379

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000596379 — 1 exons

Exon	Start	End
ENSE00003151991	58400221	58400679

Expression profiles

Bgee: expression breadth ubiquitous, 150 present calls, max score 98.22.

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lower esophagus mucosa	UBERON:0035834	98.22	gold quality
skin of leg	UBERON:0001511	92.27	gold quality
esophagus mucosa	UBERON:0002469	91.23	gold quality
skin of abdomen	UBERON:0001416	90.78	gold quality
zone of skin	UBERON:0000014	89.61	gold quality
upper arm skin	UBERON:0004263	89.38	silver quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.73	gold quality
upper leg skin	UBERON:0004262	82.63	gold quality
pancreatic ductal cell	CL:0002079	81.02	silver quality
gingival epithelium	UBERON:0001949	80.53	silver quality
gingiva	UBERON:0001828	79.87	silver quality
esophagus squamous epithelium	UBERON:0006920	78.23	silver quality
mammalian vulva	UBERON:0000997	77.51	silver quality
vagina	UBERON:0000996	76.65	gold quality
oral cavity	UBERON:0000167	74.96	silver quality
esophagus	UBERON:0001043	74.77	gold quality
ectocervix	UBERON:0012249	74.07	gold quality
mouth mucosa	UBERON:0003729	72.71	gold quality
minor salivary gland	UBERON:0001830	71.84	gold quality
tonsil	UBERON:0002372	71.37	gold quality
pharyngeal mucosa	UBERON:0000355	70.83	silver quality
cerebellar hemisphere	UBERON:0002245	68.28	gold quality
penis	UBERON:0000989	68.20	gold quality
saliva-secreting gland	UBERON:0001044	68.14	gold quality
cerebellar cortex	UBERON:0002129	68.02	gold quality
skin of hip	UBERON:0001554	67.95	gold quality
cerebellum	UBERON:0002037	67.41	gold quality
right hemisphere of cerebellum	UBERON:0014890	67.30	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	66.59	gold quality
nipple	UBERON:0002030	66.47	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.