LINC02562

Summary

LINC02562 (long intergenic non-protein coding RNA 2562, HGNC:53602) is a long non-coding RNA gene on chromosome 4q13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53602
Approved symbol	LINC02562
Name	long intergenic non-protein coding RNA 2562
Location	4q13.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-44F21.5
Ensembl gene	ENSG00000260265
Ensembl biotype	lncRNA
Entrez	105377283
RNAcentral	URS0000BC456A — lncRNA, 553 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000561705, ENST00000562355, ENST00000563602, ENST00000567197, ENST00000754017, ENST00000754018, ENST00000754019, ENST00000754020, ENST00000754021, ENST00000754022, ENST00000754023, ENST00000754024, ENST00000754025

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000561705 — 2 exons

Exon	Start	End
ENSE00002576268	75081702	75082357
ENSE00002615515	75084589	75084717

Expression profiles

Bgee: expression breadth ubiquitous, 155 present calls, max score 91.50.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0084 / max 13.6207, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
52577	0.0084	2

Top tissues by expression

229 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.50	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	89.80	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	82.26	gold quality
mucosa of paranasal sinus	UBERON:0005030	82.19	gold quality
ectocervix	UBERON:0012249	82.15	gold quality
epithelium of nasopharynx	UBERON:0001951	80.87	gold quality
rectum	UBERON:0001052	80.42	gold quality
mucosa of transverse colon	UBERON:0004991	79.94	gold quality
esophagus mucosa	UBERON:0002469	78.83	gold quality
prostate gland	UBERON:0002367	77.92	gold quality
nasal cavity mucosa	UBERON:0001826	76.78	gold quality
vagina	UBERON:0000996	76.14	gold quality
urinary bladder	UBERON:0001255	75.58	gold quality
esophagus squamous epithelium	UBERON:0006920	74.69	gold quality
esophagus	UBERON:0001043	73.70	gold quality
lower esophagus mucosa	UBERON:0035834	73.50	gold quality
transverse colon	UBERON:0001157	72.71	gold quality
minor salivary gland	UBERON:0001830	72.07	gold quality
bronchial epithelial cell	CL:0002328	71.65	gold quality
nasal cavity epithelium	UBERON:0005384	71.38	silver quality
colonic epithelium	UBERON:0000397	71.33	gold quality
bronchus	UBERON:0002185	70.76	gold quality
mucosa of sigmoid colon	UBERON:0004993	70.70	gold quality
buccal mucosa cell	CL:0002336	70.63	silver quality
mouth mucosa	UBERON:0003729	70.61	gold quality
upper leg skin	UBERON:0004262	70.54	gold quality
palpebral conjunctiva	UBERON:0001812	69.55	gold quality
gingival epithelium	UBERON:0001949	68.88	silver quality
skin of abdomen	UBERON:0001416	68.79	gold quality
saliva-secreting gland	UBERON:0001044	68.58	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	9.26

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.