LINC02563

Summary

LINC02563 (long intergenic non-protein coding RNA 2563, HGNC:52923) is a long non-coding RNA gene on chromosome 17q24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:52923
Approved symbol	LINC02563
Name	long intergenic non-protein coding RNA 2563
Location	17q24.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	CRAT40
Ensembl gene	ENSG00000263520
Ensembl biotype	lncRNA
Entrez	105827617
RNAcentral	URS000038CAAF — lncRNA, 277 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000579474

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000579474 — 3 exons

Exon	Start	End
ENSE00002688579	65457541	65457714
ENSE00002703365	65458389	65458408
ENSE00002715010	65458034	65458116

Expression profiles

Bgee: expression breadth broad, 23 present calls, max score 83.99.

Top tissues by expression

23 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	83.99	gold quality
liver	UBERON:0002107	68.30	gold quality
placenta	UBERON:0001987	59.65	gold quality
rectum	UBERON:0001052	58.83	gold quality
caudate nucleus	UBERON:0001873	54.64	gold quality
omental fat pad	UBERON:0010414	53.46	gold quality
lower esophagus muscularis layer	UBERON:0035833	53.06	gold quality
gastrocnemius	UBERON:0001388	52.90	gold quality
right atrium auricular region	UBERON:0006631	51.28	gold quality
colon	UBERON:0001155	49.19	gold quality
ascending aorta	UBERON:0001496	48.76	gold quality
transverse colon	UBERON:0001157	48.60	gold quality
muscle layer of sigmoid colon	UBERON:0035805	48.51	gold quality
left lobe of thyroid gland	UBERON:0001120	48.41	gold quality
subcutaneous adipose tissue	UBERON:0002190	47.29	gold quality
thyroid gland	UBERON:0002046	47.09	gold quality
right lung	UBERON:0002167	47.05	gold quality
thoracic mammary gland	UBERON:0005200	46.49	gold quality
small intestine	UBERON:0002108	46.26	gold quality
heart left ventricle	UBERON:0002084	45.94	gold quality
small intestine Peyer’s patch	UBERON:0003454	44.50	gold quality
right lobe of thyroid gland	UBERON:0001119	42.60	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	32.99	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.