LINC02564

Summary

LINC02564 (long intergenic non-protein coding RNA 2564, HGNC:53604) is a long non-coding RNA gene on chromosome 18p11.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53604
Approved symbol	LINC02564
Name	long intergenic non-protein coding RNA 2564
Location	18p11.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000262352
Ensembl biotype	lncRNA
Entrez	102724130
RNAcentral	URS0000BC462B — lncRNA, 826 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000572573, ENST00000575820, ENST00000837139, ENST00000837140, ENST00000837141, ENST00000837142, ENST00000837143, ENST00000837144, ENST00000837145, ENST00000837146

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000572573 — 3 exons

Exon	Start	End
ENSE00002638761	13152	13354
ENSE00002652936	15617	16352
ENSE00002655585	11125	11595

Expression profiles

Bgee: expression breadth broad, 74 present calls, max score 87.50.

Top tissues by expression

74 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	87.50	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.27	gold quality
left testis	UBERON:0004533	70.95	gold quality
testis	UBERON:0000473	70.84	gold quality
right testis	UBERON:0004534	69.18	gold quality
ganglionic eminence	UBERON:0004023	61.57	gold quality
liver	UBERON:0002107	56.33	silver quality
skeletal muscle tissue	UBERON:0001134	56.23	silver quality
hindlimb stylopod muscle	UBERON:0004252	55.31	silver quality
thoracic mammary gland	UBERON:0005200	53.59	gold quality
sural nerve	UBERON:0015488	53.20	silver quality
blood	UBERON:0000178	52.49	gold quality
multicellular organism	UBERON:0000468	51.37	gold quality
superior frontal gyrus	UBERON:0002661	50.01	gold quality
lung	UBERON:0002048	48.70	gold quality
right lobe of liver	UBERON:0001114	47.89	silver quality
muscle of leg	UBERON:0001383	47.54	silver quality
prefrontal cortex	UBERON:0000451	47.25	gold quality
subcutaneous adipose tissue	UBERON:0002190	47.22	gold quality
tibial nerve	UBERON:0001323	47.10	gold quality
lymph node	UBERON:0000029	46.94	silver quality
adipose tissue	UBERON:0001013	46.89	gold quality
gastrocnemius	UBERON:0001388	46.52	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	46.49	silver quality
omental fat pad	UBERON:0010414	46.14	gold quality
tonsil	UBERON:0002372	46.11	gold quality
vermiform appendix	UBERON:0001154	46.02	silver quality
placenta	UBERON:0001987	45.90	gold quality
body of pancreas	UBERON:0001150	45.73	silver quality
tibial artery	UBERON:0007610	45.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.16

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.