LINC02566

Summary

LINC02566 (long intergenic non-protein coding RNA 2566, HGNC:53606) is a long non-coding RNA gene on chromosome 12p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53606
Approved symbol	LINC02566
Name	long intergenic non-protein coding RNA 2566
Location	12p12.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	LNC-Sox5
Ensembl gene	ENSG00000115934
Ensembl biotype	lncRNA
Entrez	123706510
RNAcentral	URS00000EBC96 — lncRNA, 1329 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000538297

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000538297 — 2 exons

Exon	Start	End
ENSE00002222490	23251461	23251499
ENSE00002300099	23181334	23182623

Expression profiles

Bgee: expression breadth broad, 23 present calls, max score 68.54.

Top tissues by expression

163 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
colonic epithelium	UBERON:0000397	68.54	silver quality
bone marrow cell	CL:0002092	66.06	silver quality
ventricular zone	UBERON:0003053	60.89	gold quality
muscle of leg	UBERON:0001383	47.73	silver quality
adult mammalian kidney	UBERON:0000082	46.05	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.02	silver quality
islet of Langerhans	UBERON:0000006	44.81	silver quality
cortex of kidney	UBERON:0001225	44.34	silver quality
vermiform appendix	UBERON:0001154	44.00	silver quality
upper lobe of lung	UBERON:0008948	43.78	silver quality
lower lobe of lung	UBERON:0008949	43.69	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
kidney	UBERON:0002113	42.59	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
blood	UBERON:0000178	42.14	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
middle temporal gyrus	UBERON:0002771	41.80	gold quality
adenohypophysis	UBERON:0002196	41.78	gold quality
gastrocnemius	UBERON:0001388	41.71	silver quality
left coronary artery	UBERON:0001626	41.69	silver quality
testis	UBERON:0000473	41.51	gold quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
lung	UBERON:0002048	41.28	gold quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
body of uterus	UBERON:0009853	41.13	silver quality
skeletal muscle tissue	UBERON:0001134	41.10	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality
gall bladder	UBERON:0002110	40.98	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.