LINC02576

Summary

LINC02576 (long intergenic non-protein coding RNA 2576, HGNC:53748) is a long non-coding RNA gene on chromosome 2p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53748
Approved symbol	LINC02576
Name	long intergenic non-protein coding RNA 2576
Location	2p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232613
Ensembl biotype	lncRNA
Entrez	102724233
RNAcentral	URS00026A2663 — lncRNA, 3658 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000415327, ENST00000622718, ENST00000692834, ENST00000772533, ENST00000772534, ENST00000772535, ENST00000772536, ENST00000772537, ENST00000772538, ENST00000772539, ENST00000772540, ENST00000772541, ENST00000772542

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415327 — 3 exons

Exon	Start	End
ENSE00001749599	65030946	65031259
ENSE00004136569	65030727	65030812
ENSE00004136582	65037403	65038242

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 84.06.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2130 / max 38.0608, expressed in 40 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
20610	0.1131	31
20611	0.0999	30

Top tissues by expression

126 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
lymph node	UBERON:0000029	84.06	gold quality
bone marrow cell	CL:0002092	81.47	gold quality
spleen	UBERON:0002106	79.73	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.49	gold quality
tonsil	UBERON:0002372	78.14	gold quality
vermiform appendix	UBERON:0001154	77.05	gold quality
rectum	UBERON:0001052	75.05	gold quality
bone marrow	UBERON:0002371	72.53	gold quality
duodenum	UBERON:0002114	71.11	gold quality
sural nerve	UBERON:0015488	71.05	gold quality
urinary bladder	UBERON:0001255	69.90	gold quality
colonic epithelium	UBERON:0000397	68.07	silver quality
skeletal muscle tissue	UBERON:0001134	66.35	gold quality
mucosa of transverse colon	UBERON:0004991	65.67	gold quality
small intestine	UBERON:0002108	64.71	gold quality
small intestine Peyer’s patch	UBERON:0003454	64.43	gold quality
ganglionic eminence	UBERON:0004023	63.25	gold quality
transverse colon	UBERON:0001157	63.24	gold quality
monocyte	CL:0000576	62.15	gold quality
leukocyte	CL:0000738	61.87	gold quality
ventricular zone	UBERON:0003053	61.73	gold quality
saliva-secreting gland	UBERON:0001044	61.25	gold quality
intestine	UBERON:0000160	61.13	gold quality
minor salivary gland	UBERON:0001830	60.74	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.54	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.52	gold quality
blood	UBERON:0000178	60.21	gold quality
colon	UBERON:0001155	59.45	gold quality
gastrocnemius	UBERON:0001388	59.45	gold quality
muscle of leg	UBERON:0001383	59.36	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	13.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.