LINC02596

Summary

LINC02596 (long intergenic non-protein coding RNA 2596, HGNC:53948) is a long non-coding RNA gene on chromosome 1p36.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53948
Approved symbol	LINC02596
Name	long intergenic non-protein coding RNA 2596
Location	1p36.12
Locus type	RNA, long non-coding
Status	Approved
Aliases	LOC105376834
Ensembl gene	ENSG00000233431
Ensembl biotype	lncRNA
Entrez	105376834
RNAcentral	URS00026A2756 — lncRNA, 845 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000457706, ENST00000844409

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000457706 — 2 exons

Exon	Start	End
ENSE00004271137	21586472	21587089
ENSE00004271139	21590985	21591198

Expression profiles

Bgee: expression breadth broad, 87 present calls, max score 75.13.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2304 / max 33.4771, expressed in 62 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
1230	0.0836	55
1229	0.0817	58
1228	0.0446	30
1231	0.0205	12

Top tissues by expression

87 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	75.13	gold quality
blood	UBERON:0000178	71.37	gold quality
bone marrow cell	CL:0002092	69.44	silver quality
bone marrow	UBERON:0002371	60.94	silver quality
superior frontal gyrus	UBERON:0002661	59.16	gold quality
adrenal tissue	UBERON:0018303	57.95	gold quality
multicellular organism	UBERON:0000468	55.57	gold quality
vermiform appendix	UBERON:0001154	53.22	gold quality
adult mammalian kidney	UBERON:0000082	53.09	gold quality
kidney	UBERON:0002113	53.09	gold quality
left lobe of thyroid gland	UBERON:0001120	52.43	gold quality
cortex of kidney	UBERON:0001225	52.38	gold quality
thyroid gland	UBERON:0002046	51.49	gold quality
prefrontal cortex	UBERON:0000451	50.88	silver quality
descending thoracic aorta	UBERON:0002345	50.61	gold quality
monocyte	CL:0000576	50.18	silver quality
adrenal gland	UBERON:0002369	50.11	gold quality
left adrenal gland cortex	UBERON:0035825	49.48	gold quality
left adrenal gland	UBERON:0001234	49.18	gold quality
cerebellar cortex	UBERON:0002129	48.94	gold quality
metanephros cortex	UBERON:0010533	48.91	gold quality
right lung	UBERON:0002167	48.83	gold quality
cerebellar hemisphere	UBERON:0002245	48.68	gold quality
right lobe of thyroid gland	UBERON:0001119	48.53	gold quality
right adrenal gland	UBERON:0001233	48.49	gold quality
islet of Langerhans	UBERON:0000006	48.36	gold quality
placenta	UBERON:0001987	48.25	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	46.91	silver quality
right adrenal gland cortex	UBERON:0035827	46.79	gold quality
spleen	UBERON:0002106	46.75	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.