LINC02597

Summary

LINC02597 (long intergenic non-protein coding RNA 2597, HGNC:53950) is a long non-coding RNA gene on chromosome 20q13.12.

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53950
Approved symbol	LINC02597
Name	long intergenic non-protein coding RNA 2597
Location	20q13.12
Locus type	RNA, long non-coding
Status	Approved
Aliases	LOC101929866
Entrez	101929866
RNAcentral	URS00026A1EB1 — lncRNA, 2832 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 0

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

None — 0 exons

Expression profiles

Top tissues by expression

0 total, by Bgee expression score (0-100, higher = more expressed):

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Protein identifiers

Canonical reviewed UniProt: None (reviewed: )

All UniProt accessions (0):

RefSeq proteins (0): (*=MANE)

Domains & families (InterPro)

Structure

Experimental structures (PDB)

0 structures.

Predicted structure (AlphaFold)

Function

Pathways and Gene Ontology

Reactome pathways

0 pathways

MSigDB gene sets: 0 (showing top):

GO Biological Process (0):

GO Molecular Function (0):

GO Cellular Component (0):

Protein interactions and networks

STRING

0 interactions, top by confidence (×1000):

IntAct

0 interactions, top by confidence:

SIGNOR signaling

0 interactions.

Disease & clinical

Clinical variants and AI predictions

ClinVar

0 variants total. Per-class counts are floors (≥ shown; pagination cap):

Classification	Count (floor)
Pathogenic	0
Likely pathogenic	0
Uncertain significance	0
Likely benign	0
Benign	0

Top pathogenic / likely-pathogenic (0)

SpliceAI

0 predictions. Top by Δscore:

AlphaMissense

0 scored. Top likely-pathogenic:

dbSNP variants (sampled 300 via entrez): RS1000071031 (20:45190540 AT>A), RS1000094742 (20:45189486 C>T), RS1000566439 (20:45179176 T>C), RS1000708116 (20:45184152 C>T), RS1000906527 (20:45185625 T>G), RS1001270759 (20:45183566 A>C,G,T), RS1001326374 (20:45183249 G>A), RS1001342648 (20:45184628 C>A,T), RS1001555834 (20:45178195 T>C), RS1001798233 (20:45180148 A>C), RS1001878529 (20:45184404 G>A), RS1002455527 (20:45177836 T>C), RS1003120661 (20:45180833 T>C), RS1003143903 (20:45185759 C>T), RS1003341743 (20:45179190 G>A,C)

Disease associations

OMIM: gene `` | disease phenotypes:

GenCC curated gene-disease

Mondo (0):

Orphanet (0):

HPO phenotypes

0 total (0 of 0 shown, HPO-id order):

GWAS associations

0 associations (top):

Drugs & pharmacology

Drug and pharmacology data

Is drug target: no

PharmGKB: 0 entries

Clinical trials (associated diseases)

0 trials via MONDO — disease-level, not drug-specific.