LINC02598

Summary

LINC02598 (long intergenic non-protein coding RNA 2598, HGNC:53954) is a long non-coding RNA gene on chromosome 12p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53954
Approved symbol	LINC02598
Name	long intergenic non-protein coding RNA 2598
Location	12p13.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11, 277P12.9
Ensembl gene	ENSG00000256155
Ensembl biotype	lncRNA
Entrez	112588022
RNAcentral	URS000212322E — lncRNA, 2174 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000535911

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000535911 — 2 exons

Exon	Start	End
ENSE00001635169	10358464	10358563
ENSE00002302947	10360584	10361045

Expression profiles

Bgee: expression breadth broad, 98 present calls, max score 75.92.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0140 / max 10.5723, expressed in 1 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
129514	0.0140	1

Top tissues by expression

98 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.92	silver quality
cortical plate	UBERON:0005343	66.39	gold quality
sural nerve	UBERON:0015488	66.04	silver quality
granulocyte	CL:0000094	65.52	gold quality
colonic epithelium	UBERON:0000397	63.24	silver quality
gall bladder	UBERON:0002110	58.57	gold quality
bone marrow	UBERON:0002371	57.92	gold quality
urinary bladder	UBERON:0001255	57.87	gold quality
leukocyte	CL:0000738	57.75	gold quality
lymph node	UBERON:0000029	55.14	gold quality
blood	UBERON:0000178	54.38	gold quality
islet of Langerhans	UBERON:0000006	54.16	gold quality
monocyte	CL:0000576	52.81	gold quality
prefrontal cortex	UBERON:0000451	52.11	gold quality
vermiform appendix	UBERON:0001154	51.25	gold quality
endometrium	UBERON:0001295	49.95	gold quality
gastrocnemius	UBERON:0001388	47.56	silver quality
liver	UBERON:0002107	47.27	gold quality
primary visual cortex	UBERON:0002436	46.50	silver quality
tonsil	UBERON:0002372	46.22	gold quality
prostate gland	UBERON:0002367	45.89	gold quality
heart left ventricle	UBERON:0002084	45.85	gold quality
esophagus mucosa	UBERON:0002469	45.74	gold quality
adrenal tissue	UBERON:0018303	45.37	silver quality
spleen	UBERON:0002106	45.21	gold quality
right lobe of liver	UBERON:0001114	45.17	silver quality
esophagus	UBERON:0001043	45.13	gold quality
body of pancreas	UBERON:0001150	45.02	gold quality
lung	UBERON:0002048	44.96	gold quality
vagina	UBERON:0000996	44.95	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.79

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.