LINC02601

Summary

LINC02601 (long intergenic non-protein coding RNA 2601, HGNC:53966) is a long non-coding RNA gene on chromosome Xp11.4.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:53966
Approved symbol	LINC02601
Name	long intergenic non-protein coding RNA 2601
Location	Xp11.4
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223714
Ensembl biotype	lncRNA
Entrez	105373185
RNAcentral	URS0000A7744F — lncRNA, 850 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000452501, ENST00000781043

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000452501 — 2 exons

Exon	Start	End
ENSE00004152815	41276089	41277443
ENSE00004152818	41275626	41275883

Expression profiles

Bgee: expression breadth ubiquitous, 112 present calls, max score 66.53.

Top tissues by expression

112 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
muscle tissue	UBERON:0002385	66.53	gold quality
ventricular zone	UBERON:0003053	62.31	gold quality
cortical plate	UBERON:0005343	60.29	gold quality
prefrontal cortex	UBERON:0000451	56.51	gold quality
stromal cell of endometrium	CL:0002255	54.60	silver quality
lymph node	UBERON:0000029	53.85	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	53.34	gold quality
bone marrow	UBERON:0002371	52.91	silver quality
frontal cortex	UBERON:0001870	52.65	gold quality
monocyte	CL:0000576	51.65	silver quality
placenta	UBERON:0001987	51.38	gold quality
Brodmann (1909) area 9	UBERON:0013540	51.19	gold quality
hindlimb stylopod muscle	UBERON:0004252	51.13	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	51.06	gold quality
endometrium	UBERON:0001295	50.93	gold quality
ectocervix	UBERON:0012249	50.90	gold quality
myometrium	UBERON:0001296	50.89	gold quality
cerebral cortex	UBERON:0000956	50.82	gold quality
superior frontal gyrus	UBERON:0002661	50.79	gold quality
mucosa of stomach	UBERON:0001199	50.46	gold quality
body of uterus	UBERON:0009853	50.36	gold quality
primary visual cortex	UBERON:0002436	50.22	gold quality
right uterine tube	UBERON:0001302	49.98	gold quality
duodenum	UBERON:0002114	49.91	gold quality
blood	UBERON:0000178	49.89	silver quality
islet of Langerhans	UBERON:0000006	49.42	gold quality
anterior cingulate cortex	UBERON:0009835	49.21	gold quality
fallopian tube	UBERON:0003889	49.16	gold quality
liver	UBERON:0002107	49.05	silver quality
pancreas	UBERON:0001264	49.02	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.38

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.