LINC02606

Summary

LINC02606 (long intergenic non-protein coding RNA 2606, HGNC:54047) is a long non-coding RNA gene on chromosome 1p36.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54047
Approved symbol	LINC02606
Name	long intergenic non-protein coding RNA 2606
Location	1p36.22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000284693
Ensembl biotype	lncRNA
Entrez	100506022
RNAcentral	URS00007E428E — lncRNA, 2377 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 28 — 28 lncRNA

ENST00000641325, ENST00000641507, ENST00000641940, ENST00000685867, ENST00000775385, ENST00000775386, ENST00000775387, ENST00000775388, ENST00000775389, ENST00000775390, ENST00000775391, ENST00000775392, ENST00000775393, ENST00000775394, ENST00000775395, ENST00000775396, ENST00000775397, ENST00000775398, ENST00000775399, ENST00000775400, ENST00000775401, ENST00000775403, ENST00000775404, ENST00000775405, ENST00000775408, ENST00000775411, ENST00000775412, ENST00000775413

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000641325 — 2 exons

Exon	Start	End
ENSE00003812526	9425094	9427381
ENSE00003813879	9428922	9429075

Expression profiles

Bgee: expression breadth ubiquitous, 157 present calls, max score 81.22.

FANTOM5 (CAGE): breadth broad, TPM avg 0.9432 / max 54.2742, expressed in 578 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
10218	0.8501	547
10219	0.0767	36
10220	0.0164	6

Top tissues by expression

240 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.22	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	69.34	gold quality
colonic epithelium	UBERON:0000397	69.18	silver quality
ventricular zone	UBERON:0003053	68.02	gold quality
stromal cell of endometrium	CL:0002255	67.88	gold quality
smooth muscle tissue	UBERON:0001135	67.74	gold quality
bone marrow cell	CL:0002092	67.31	silver quality
spinal cord	UBERON:0002240	66.71	gold quality
ganglionic eminence	UBERON:0004023	64.93	gold quality
descending thoracic aorta	UBERON:0002345	63.87	gold quality
prefrontal cortex	UBERON:0000451	62.81	gold quality
right coronary artery	UBERON:0001625	62.71	gold quality
cortical plate	UBERON:0005343	62.55	gold quality
thoracic aorta	UBERON:0001515	62.19	gold quality
popliteal artery	UBERON:0002250	62.13	gold quality
tibial artery	UBERON:0007610	62.13	gold quality
aorta	UBERON:0000947	62.02	gold quality
ascending aorta	UBERON:0001496	61.98	gold quality
putamen	UBERON:0001874	61.66	gold quality
gall bladder	UBERON:0002110	61.54	gold quality
left coronary artery	UBERON:0001626	61.42	gold quality
amygdala	UBERON:0001876	61.24	gold quality
hindlimb stylopod muscle	UBERON:0004252	60.95	gold quality
body of uterus	UBERON:0009853	60.94	gold quality
muscle layer of sigmoid colon	UBERON:0035805	60.53	gold quality
islet of Langerhans	UBERON:0000006	60.42	gold quality
coronary artery	UBERON:0001621	60.37	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	60.13	gold quality
lower esophagus muscularis layer	UBERON:0035833	60.10	gold quality
lower esophagus	UBERON:0013473	60.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.