LINC02607

Summary

LINC02607 (long intergenic non-protein coding RNA 2607, HGNC:54049) is a long non-coding RNA gene on chromosome 1p21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54049
Approved symbol	LINC02607
Name	long intergenic non-protein coding RNA 2607
Location	1p21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000228971
Ensembl biotype	lncRNA
Entrez	100996635
RNAcentral	URS000075A32F — lncRNA, 1679 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 18 — 18 lncRNA

ENST00000411798, ENST00000440116, ENST00000456933, ENST00000653589, ENST00000654040, ENST00000655217, ENST00000656764, ENST00000664663, ENST00000664740, ENST00000665349, ENST00000667517, ENST00000669804, ENST00000702850, ENST00000819547, ENST00000823817, ENST00000823818, ENST00000823819, ENST00000823820

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000411798 — 3 exons

Exon	Start	End
ENSE00001592323	95514151	95515464
ENSE00001629672	95512520	95512622
ENSE00001717435	95510167	95510362

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 85.04.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.5832 / max 502.3765, expressed in 122 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
4128	1.1724	71
4129	0.2323	41
4130	0.1285	32
4131	0.0500	23

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
Brodmann (1909) area 9	UBERON:0013540	85.04	gold quality
anterior cingulate cortex	UBERON:0009835	84.41	gold quality
superior frontal gyrus	UBERON:0002661	84.11	gold quality
prefrontal cortex	UBERON:0000451	83.90	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	82.66	gold quality
cortical plate	UBERON:0005343	82.65	gold quality
frontal cortex	UBERON:0001870	82.28	gold quality
cerebral cortex	UBERON:0000956	81.94	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.11	gold quality
right frontal lobe	UBERON:0002810	79.24	gold quality
Ammon’s horn	UBERON:0001954	78.99	gold quality
temporal lobe	UBERON:0001871	78.01	gold quality
amygdala	UBERON:0001876	77.88	gold quality
colonic epithelium	UBERON:0000397	75.54	gold quality
thoracic mammary gland	UBERON:0005200	70.91	gold quality
brain	UBERON:0000955	70.78	gold quality
subcutaneous adipose tissue	UBERON:0002190	70.46	gold quality
adipose tissue	UBERON:0001013	70.14	gold quality
omental fat pad	UBERON:0010414	69.26	gold quality
right hemisphere of cerebellum	UBERON:0014890	68.91	gold quality
primary visual cortex	UBERON:0002436	67.96	gold quality
ventricular zone	UBERON:0003053	66.44	gold quality
ganglionic eminence	UBERON:0004023	62.62	gold quality
tonsil	UBERON:0002372	61.71	silver quality
hindlimb stylopod muscle	UBERON:0004252	61.41	gold quality
corpus callosum	UBERON:0002336	60.14	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	60.02	gold quality
cerebellar hemisphere	UBERON:0002245	57.17	gold quality
multicellular organism	UBERON:0000468	57.16	gold quality
skin of abdomen	UBERON:0001416	57.13	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.76

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.