LINC02608

Summary

LINC02608 (long intergenic non-protein coding RNA 2608, HGNC:54052) is a long non-coding RNA gene on chromosome 1q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54052
Approved symbol	LINC02608
Name	long intergenic non-protein coding RNA 2608
Location	1q32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226251
Ensembl biotype	lncRNA
Entrez	101929541
RNAcentral	URS00007E4A65 — lncRNA, 415 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 35 — 35 lncRNA

ENST00000412221, ENST00000431307, ENST00000443448, ENST00000658599, ENST00000663668, ENST00000664988, ENST00000667543, ENST00000669457, ENST00000669915, ENST00000685933, ENST00000690953, ENST00000691706, ENST00000771310, ENST00000771311, ENST00000771312, ENST00000771313, ENST00000771314, ENST00000771315, ENST00000771316, ENST00000771317, ENST00000771318, ENST00000771319, ENST00000771320, ENST00000771321, ENST00000771322, ENST00000771323, ENST00000771324, ENST00000771325, ENST00000771326, ENST00000771327, ENST00000771328, ENST00000771329, ENST00000771330, ENST00000771331, ENST00000771332

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000412221 — 2 exons

Exon	Start	End
ENSE00001779025	212225280	212225513
ENSE00001796809	212226436	212226538

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 90.77.

FANTOM5 (CAGE): breadth broad, TPM avg 0.7954 / max 169.6474, expressed in 284 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
17373	0.6029	216
17374	0.1925	83

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	90.77	gold quality
quadriceps femoris	UBERON:0001377	82.53	gold quality
apex of heart	UBERON:0002098	81.54	gold quality
skeletal muscle tissue	UBERON:0001134	78.14	gold quality
right lobe of liver	UBERON:0001114	76.94	gold quality
hindlimb stylopod muscle	UBERON:0004252	76.35	gold quality
muscle tissue	UBERON:0002385	76.14	gold quality
liver	UBERON:0002107	75.75	gold quality
heart left ventricle	UBERON:0002084	74.27	gold quality
muscle of leg	UBERON:0001383	73.51	gold quality
gastrocnemius	UBERON:0001388	73.40	gold quality
ganglionic eminence	UBERON:0004023	72.13	gold quality
lower esophagus mucosa	UBERON:0035834	70.85	gold quality
heart	UBERON:0000948	70.82	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.41	gold quality
bone marrow cell	CL:0002092	69.18	silver quality
fundus of stomach	UBERON:0001160	69.00	gold quality
cerebellar vermis	UBERON:0004720	67.75	gold quality
right atrium auricular region	UBERON:0006631	66.84	gold quality
body of stomach	UBERON:0001161	66.61	gold quality
islet of Langerhans	UBERON:0000006	66.24	gold quality
thymus	UBERON:0002370	65.56	silver quality
stomach	UBERON:0000945	64.91	gold quality
pancreas	UBERON:0001264	64.74	gold quality
bone marrow	UBERON:0002371	64.73	gold quality
body of pancreas	UBERON:0001150	63.53	gold quality
skin of abdomen	UBERON:0001416	63.06	gold quality
adult mammalian kidney	UBERON:0000082	62.42	gold quality
prefrontal cortex	UBERON:0000451	61.73	gold quality
esophagus mucosa	UBERON:0002469	61.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.24

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.