LINC02610

Summary

LINC02610 (long intergenic non-protein coding RNA 2610, HGNC:27177) is a long non-coding RNA gene on chromosome 2q37.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27177
Approved symbol	LINC02610
Name	long intergenic non-protein coding RNA 2610
Location	2q37.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000186235
Ensembl biotype	lncRNA
Entrez	151174
RNAcentral	URS000075EFA8 — lncRNA, 1977 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 14 lncRNA, 1 retained_intron

ENST00000409070, ENST00000409376, ENST00000409942, ENST00000466075, ENST00000470346, ENST00000475669, ENST00000659231, ENST00000664102, ENST00000799134, ENST00000799135, ENST00000799136, ENST00000799137, ENST00000799138, ENST00000799139, ENST00000799140

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000409070 — 3 exons

Exon	Start	End
ENSE00003755965	238227684	238227798
ENSE00004187394	238231201	238231734
ENSE00004187402	238225103	238225499

Expression profiles

Bgee: expression breadth ubiquitous, 154 present calls, max score 89.33.

FANTOM5 (CAGE): breadth broad, TPM avg 1.5209 / max 111.4180, expressed in 476 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
34759	1.4223	469
34758	0.0986	13

Top tissues by expression

248 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreatic ductal cell	CL:0002079	89.33	silver quality
right testis	UBERON:0004534	87.48	gold quality
left testis	UBERON:0004533	87.28	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.88	silver quality
testis	UBERON:0000473	83.84	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	79.81	gold quality
spinal cord	UBERON:0002240	78.04	gold quality
right hemisphere of cerebellum	UBERON:0014890	76.89	gold quality
cerebellar hemisphere	UBERON:0002245	76.40	gold quality
cerebellar cortex	UBERON:0002129	76.29	gold quality
cerebellum	UBERON:0002037	75.55	gold quality
epithelial cell of pancreas	CL:0000083	74.77	gold quality
endothelial cell	CL:0000115	74.20	gold quality
prefrontal cortex	UBERON:0000451	74.14	gold quality
upper arm skin	UBERON:0004263	73.14	gold quality
substantia nigra	UBERON:0002038	72.61	gold quality
hypothalamus	UBERON:0001898	72.51	gold quality
right frontal lobe	UBERON:0002810	72.44	gold quality
amygdala	UBERON:0001876	72.37	gold quality
body of pancreas	UBERON:0001150	72.19	gold quality
Brodmann (1909) area 9	UBERON:0013540	71.94	gold quality
frontal cortex	UBERON:0001870	71.41	gold quality
midbrain	UBERON:0001891	71.19	gold quality
putamen	UBERON:0001874	71.05	gold quality
neocortex	UBERON:0001950	71.01	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	70.82	gold quality
anterior cingulate cortex	UBERON:0009835	70.61	gold quality
right coronary artery	UBERON:0001625	70.37	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	70.36	gold quality
cortical plate	UBERON:0005343	70.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.23

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.