LINC02611

Summary

LINC02611 (long intergenic non-protein coding RNA 2611, HGNC:54060) is a long non-coding RNA gene on chromosome 2q11.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54060
Approved symbol	LINC02611
Name	long intergenic non-protein coding RNA 2611
Location	2q11.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226791
Ensembl biotype	lncRNA
Entrez	101927070
RNAcentral	URS00007E46D7 — lncRNA, 2117 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 35 — 35 lncRNA

ENST00000419865, ENST00000622970, ENST00000623301, ENST00000624259, ENST00000629175, ENST00000654365, ENST00000654907, ENST00000658382, ENST00000662898, ENST00000663222, ENST00000669255, ENST00000687107, ENST00000687873, ENST00000689176, ENST00000689257, ENST00000691125, ENST00000701315, ENST00000702073, ENST00000702797, ENST00000816153, ENST00000816154, ENST00000816155, ENST00000816156, ENST00000816157, ENST00000816158, ENST00000816159, ENST00000816160, ENST00000816161, ENST00000816162, ENST00000816163, ENST00000816164, ENST00000816165, ENST00000816166, ENST00000816167, ENST00000816168

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419865 — 4 exons

Exon	Start	End
ENSE00001598427	98768902	98769046
ENSE00001740570	98761098	98762578
ENSE00001791425	98768611	98768786
ENSE00003880660	98771619	98772285

Expression profiles

Bgee: expression breadth ubiquitous, 127 present calls, max score 76.43.

FANTOM5 (CAGE): breadth broad, TPM avg 0.8997 / max 81.7939, expressed in 210 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
29856	0.4488	146
29857	0.2339	102
29855	0.1358	67
29858	0.0588	24
29854	0.0224	11

Top tissues by expression

127 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	76.43	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	72.94	silver quality
granulocyte	CL:0000094	71.97	gold quality
colonic epithelium	UBERON:0000397	71.60	silver quality
minor salivary gland	UBERON:0001830	70.36	gold quality
saliva-secreting gland	UBERON:0001044	70.23	gold quality
vermiform appendix	UBERON:0001154	68.97	gold quality
cerebellar cortex	UBERON:0002129	68.88	gold quality
cerebellum	UBERON:0002037	68.87	gold quality
cerebellar hemisphere	UBERON:0002245	68.83	gold quality
lymph node	UBERON:0000029	68.77	gold quality
right hemisphere of cerebellum	UBERON:0014890	68.60	gold quality
islet of Langerhans	UBERON:0000006	68.04	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	66.41	gold quality
bone marrow cell	CL:0002092	66.36	silver quality
right coronary artery	UBERON:0001625	65.89	gold quality
tonsil	UBERON:0002372	65.81	gold quality
placenta	UBERON:0001987	65.02	gold quality
blood	UBERON:0000178	64.25	gold quality
muscle tissue	UBERON:0002385	63.31	gold quality
duodenum	UBERON:0002114	62.81	gold quality
mucosa of transverse colon	UBERON:0004991	62.30	gold quality
gall bladder	UBERON:0002110	61.61	gold quality
smooth muscle tissue	UBERON:0001135	61.59	gold quality
leukocyte	CL:0000738	61.28	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	61.18	gold quality
rectum	UBERON:0001052	61.17	gold quality
right adrenal gland cortex	UBERON:0035827	60.95	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.91	gold quality
bone marrow	UBERON:0002371	60.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.19

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.