LINC02612

Summary

LINC02612 (long intergenic non-protein coding RNA 2612, HGNC:54067) is a long non-coding RNA gene on chromosome 2q23.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54067
Approved symbol	LINC02612
Name	long intergenic non-protein coding RNA 2612
Location	2q23.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224048
Ensembl biotype	lncRNA
Entrez	101929282
RNAcentral	URS000075BC5C — lncRNA, 706 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 22 — 22 lncRNA

ENST00000413247, ENST00000423428, ENST00000427615, ENST00000440668, ENST00000443811, ENST00000652947, ENST00000653799, ENST00000655103, ENST00000655327, ENST00000657466, ENST00000660328, ENST00000661012, ENST00000665320, ENST00000665399, ENST00000665656, ENST00000666939, ENST00000667037, ENST00000667235, ENST00000667502, ENST00000670597, ENST00000797903, ENST00000797904

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000413247 — 5 exons

Exon	Start	End
ENSE00001601510	150634636	150634739
ENSE00001620945	150628897	150629121
ENSE00001641648	150632267	150632396
ENSE00001734837	150635186	150635348
ENSE00001753443	150629431	150629582

Expression profiles

Bgee: expression breadth broad, 70 present calls, max score 97.12.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0076 / max 8.1195, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
23039	0.0076	3

Top tissues by expression

70 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	97.12	gold quality
left testis	UBERON:0004533	79.87	gold quality
testis	UBERON:0000473	79.61	gold quality
right testis	UBERON:0004534	78.04	gold quality
sural nerve	UBERON:0015488	64.03	silver quality
stromal cell of endometrium	CL:0002255	63.14	gold quality
multicellular organism	UBERON:0000468	57.83	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	55.27	gold quality
adrenal tissue	UBERON:0018303	53.64	gold quality
blood	UBERON:0000178	51.76	gold quality
liver	UBERON:0002107	51.65	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	51.53	gold quality
lymph node	UBERON:0000029	51.31	silver quality
islet of Langerhans	UBERON:0000006	51.30	gold quality
monocyte	CL:0000576	50.87	silver quality
adrenal gland	UBERON:0002369	50.79	gold quality
left adrenal gland	UBERON:0001234	50.55	gold quality
right adrenal gland	UBERON:0001233	50.43	gold quality
gastrocnemius	UBERON:0001388	50.08	gold quality
right lobe of liver	UBERON:0001114	49.76	gold quality
left adrenal gland cortex	UBERON:0035825	49.03	gold quality
placenta	UBERON:0001987	48.87	gold quality
endometrium	UBERON:0001295	48.73	gold quality
prefrontal cortex	UBERON:0000451	47.11	gold quality
right adrenal gland cortex	UBERON:0035827	47.00	gold quality
myometrium	UBERON:0001296	46.57	gold quality
body of pancreas	UBERON:0001150	45.01	silver quality
hypothalamus	UBERON:0001898	44.24	gold quality
left coronary artery	UBERON:0001626	42.58	silver quality
heart left ventricle	UBERON:0002084	42.26	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.