LINC02617

Summary

LINC02617 (long intergenic non-protein coding RNA 2617, HGNC:54089) is a long non-coding RNA gene on chromosome 12p13.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54089
Approved symbol	LINC02617
Name	long intergenic non-protein coding RNA 2617
Location	12p13.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	ENST00000539009
Ensembl gene	ENSG00000256288
Ensembl biotype	lncRNA
Entrez	113523642
RNAcentral	URS0000E609FB — lncRNA, 650 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000539009

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000539009 — 3 exons

Exon	Start	End
ENSE00002258858	10336112	10336309
ENSE00004051153	10332860	10333063
ENSE00004051154	10338045	10338294

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 73.82.

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
skeletal muscle tissue	UBERON:0001134	73.82	gold quality
bone marrow cell	CL:0002092	69.63	gold quality
tonsil	UBERON:0002372	68.16	gold quality
colonic epithelium	UBERON:0000397	66.84	silver quality
bone marrow	UBERON:0002371	64.89	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.22	gold quality
stromal cell of endometrium	CL:0002255	61.24	gold quality
ganglionic eminence	UBERON:0004023	60.76	gold quality
primary visual cortex	UBERON:0002436	59.25	gold quality
liver	UBERON:0002107	58.90	gold quality
uterine cervix	UBERON:0000002	56.45	gold quality
monocyte	CL:0000576	56.39	gold quality
lymph node	UBERON:0000029	56.13	gold quality
urinary bladder	UBERON:0001255	56.09	gold quality
endometrium	UBERON:0001295	54.90	gold quality
ectocervix	UBERON:0012249	54.54	gold quality
gall bladder	UBERON:0002110	54.19	gold quality
islet of Langerhans	UBERON:0000006	53.82	gold quality
calcaneal tendon	UBERON:0003701	53.67	gold quality
esophagus mucosa	UBERON:0002469	53.50	gold quality
blood	UBERON:0000178	53.20	gold quality
lower esophagus mucosa	UBERON:0035834	53.20	gold quality
vagina	UBERON:0000996	51.45	gold quality
gastrocnemius	UBERON:0001388	51.35	gold quality
esophagus	UBERON:0001043	50.90	gold quality
skin of leg	UBERON:0001511	50.69	gold quality
adult mammalian kidney	UBERON:0000082	50.63	gold quality
pancreas	UBERON:0001264	50.62	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.28	gold quality
zone of skin	UBERON:0000014	49.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.