LINC02619

Summary

LINC02619 (long intergenic non-protein coding RNA 2619, HGNC:54094) is a long non-coding RNA gene on chromosome 4q13.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54094
Approved symbol	LINC02619
Name	long intergenic non-protein coding RNA 2619
Location	4q13.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249382
Ensembl biotype	lncRNA
Entrez	105377245
RNAcentral	URS0000A76CBB — lncRNA, 701 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 9 lncRNA, 1 retained_intron

ENST00000507912, ENST00000512911, ENST00000514707, ENST00000655838, ENST00000660037, ENST00000664747, ENST00000665406, ENST00000669647, ENST00000669862, ENST00000670153

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507912 — 2 exons

Exon	Start	End
ENSE00002029251	58988104	58988152
ENSE00002034446	58987531	58987955

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 84.13.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0110 / max 10.3750, expressed in 4 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
52252	0.0110	4

Top tissues by expression

183 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	84.13	gold quality
left testis	UBERON:0004533	78.19	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.34	gold quality
testis	UBERON:0000473	75.68	gold quality
right testis	UBERON:0004534	75.19	gold quality
sural nerve	UBERON:0015488	66.75	silver quality
sperm	CL:0000019	66.17	gold quality
hindlimb stylopod muscle	UBERON:0004252	65.17	gold quality
lower lobe of lung	UBERON:0008949	55.37	silver quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
epithelial cell of pancreas	CL:0000083	52.84	gold quality
islet of Langerhans	UBERON:0000006	51.90	gold quality
gastrocnemius	UBERON:0001388	51.14	gold quality
corpus callosum	UBERON:0002336	50.78	gold quality
myocardium	UBERON:0002349	50.25	gold quality
ileal mucosa	UBERON:0000331	49.68	silver quality
monocyte	CL:0000576	48.77	silver quality
deltoid	UBERON:0001476	48.17	gold quality
right hemisphere of cerebellum	UBERON:0014890	47.66	gold quality
Brodmann (1909) area 9	UBERON:0013540	47.27	gold quality
nasal cavity epithelium	UBERON:0005384	47.03	gold quality
tibialis anterior	UBERON:0001385	46.94	silver quality
calcaneal tendon	UBERON:0003701	46.77	silver quality
quadriceps femoris	UBERON:0001377	46.38	gold quality
vastus lateralis	UBERON:0001379	45.40	gold quality
anatomical system	UBERON:0000467	45.16	gold quality
pancreatic ductal cell	CL:0002079	45.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.96

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.