LINC02620

Summary

LINC02620 (long intergenic non-protein coding RNA 2620, HGNC:54097) is a long non-coding RNA gene on chromosome 10q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54097
Approved symbol	LINC02620
Name	long intergenic non-protein coding RNA 2620
Location	10q25.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	BCRT1
Ensembl gene	ENSG00000225768
Ensembl biotype	lncRNA
Entrez	101927523
RNAcentral	URS000075C96D — lncRNA, 1014 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000447860

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000447860 — 3 exons

Exon	Start	End
ENSE00001689214	104476902	104477057
ENSE00001725837	104474939	104475653
ENSE00001746219	104480133	104480274

Expression profiles

Bgee: expression breadth broad, 43 present calls, max score 53.02.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0047 / max 2.3181, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
111322	0.0047	2

Top tissues by expression

164 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
monocyte	CL:0000576	53.02	gold quality
gastrocnemius	UBERON:0001388	52.93	gold quality
islet of Langerhans	UBERON:0000006	48.57	silver quality
smooth muscle tissue	UBERON:0001135	47.15	gold quality
upper lobe of left lung	UBERON:0008952	46.94	gold quality
adenohypophysis	UBERON:0002196	46.28	gold quality
skin of abdomen	UBERON:0001416	45.42	gold quality
prefrontal cortex	UBERON:0000451	45.39	silver quality
vermiform appendix	UBERON:0001154	45.39	silver quality
right atrium auricular region	UBERON:0006631	45.13	gold quality
pituitary gland	UBERON:0000007	44.99	gold quality
tibial artery	UBERON:0007610	44.64	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
cardiac atrium	UBERON:0002081	43.19	gold quality
buccal mucosa cell	CL:0002336	43.00	gold quality
aorta	UBERON:0000947	42.96	silver quality
lower esophagus muscularis layer	UBERON:0035833	42.58	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
right adrenal gland	UBERON:0001233	42.52	silver quality
blood	UBERON:0000178	42.37	gold quality
transverse colon	UBERON:0001157	42.29	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
left adrenal gland cortex	UBERON:0035825	41.44	silver quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
heart	UBERON:0000948	41.34	silver quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
inferior vagus X ganglion	UBERON:0005363	41.22	gold quality
upper lobe of lung	UBERON:0008948	41.21	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.14

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• LncRNA BCRT1 facilitates osteosarcoma progression via regulating miR-1303/FGF7 axis. (PMID:34102610)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.