LINC02623

Summary

LINC02623 (long intergenic non-protein coding RNA 2623, HGNC:54101) is a long non-coding RNA gene on chromosome 10q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54101
Approved symbol	LINC02623
Name	long intergenic non-protein coding RNA 2623
Location	10q11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234944
Ensembl biotype	lncRNA
Entrez	101929445
RNAcentral	URS0000A7764F — lncRNA, 1739 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000421320

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000421320 — 2 exons

Exon	Start	End
ENSE00004075483	42872509	42874060
ENSE00004075484	42871430	42871682

Expression profiles

Bgee: expression breadth ubiquitous, 110 present calls, max score 79.22.

Top tissues by expression

110 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.22	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.05	gold quality
lower esophagus mucosa	UBERON:0035834	68.31	gold quality
esophagus mucosa	UBERON:0002469	67.52	gold quality
esophagus	UBERON:0001043	61.34	gold quality
stromal cell of endometrium	CL:0002255	61.18	gold quality
cortical plate	UBERON:0005343	60.87	silver quality
right atrium auricular region	UBERON:0006631	59.80	gold quality
nucleus accumbens	UBERON:0001882	58.59	gold quality
putamen	UBERON:0001874	58.15	gold quality
hindlimb stylopod muscle	UBERON:0004252	58.03	gold quality
sural nerve	UBERON:0015488	57.99	silver quality
prefrontal cortex	UBERON:0000451	57.72	gold quality
caudate nucleus	UBERON:0001873	57.65	gold quality
frontal cortex	UBERON:0001870	57.39	gold quality
right frontal lobe	UBERON:0002810	57.35	gold quality
ganglionic eminence	UBERON:0004023	57.19	silver quality
primary visual cortex	UBERON:0002436	56.68	gold quality
superior frontal gyrus	UBERON:0002661	56.61	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	56.43	gold quality
cerebral cortex	UBERON:0000956	56.21	gold quality
heart	UBERON:0000948	55.51	gold quality
skeletal muscle tissue	UBERON:0001134	55.34	gold quality
anterior cingulate cortex	UBERON:0009835	55.14	gold quality
amygdala	UBERON:0001876	54.99	gold quality
lower esophagus	UBERON:0013473	54.88	gold quality
brain	UBERON:0000955	54.83	gold quality
lower esophagus muscularis layer	UBERON:0035833	54.75	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	54.56	gold quality
Brodmann (1909) area 9	UBERON:0013540	54.30	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.82

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.