LINC02625

Summary

LINC02625 (long intergenic non-protein coding RNA 2625, HGNC:54104) is a long non-coding RNA gene on chromosome 10q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54104
Approved symbol	LINC02625
Name	long intergenic non-protein coding RNA 2625
Location	10q21.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233643
Ensembl biotype	lncRNA
Entrez	107984237
RNAcentral	URS0002A2155C — lncRNA, 1731 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 38 — 38 lncRNA

ENST00000441001, ENST00000608672, ENST00000717515, ENST00000717516, ENST00000717517, ENST00000717518, ENST00000717519, ENST00000717520, ENST00000717521, ENST00000717522, ENST00000717523, ENST00000717524, ENST00000717525, ENST00000717526, ENST00000717527, ENST00000717528, ENST00000717529, ENST00000717530, ENST00000717531, ENST00000717532, ENST00000717533, ENST00000717534, ENST00000717535, ENST00000717536, ENST00000717537, ENST00000717538, ENST00000717539, ENST00000717540, ENST00000717541, ENST00000717542, ENST00000717543, ENST00000717544, ENST00000717545, ENST00000717546, ENST00000717547, ENST00000717548, ENST00000717549, ENST00000830539

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000441001 — 5 exons

Exon	Start	End
ENSE00001602265	61821147	61821246
ENSE00001676785	61794351	61794465
ENSE00004032717	61820134	61820155
ENSE00004032730	61781745	61781839
ENSE00004032735	61782228	61782405

Expression profiles

Bgee: expression breadth broad, 89 present calls, max score 66.07.

Top tissues by expression

89 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
hindlimb stylopod muscle	UBERON:0004252	66.07	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.73	gold quality
tonsil	UBERON:0002372	58.31	gold quality
left testis	UBERON:0004533	58.18	gold quality
testis	UBERON:0000473	57.93	gold quality
islet of Langerhans	UBERON:0000006	56.69	gold quality
cortex of kidney	UBERON:0001225	56.31	gold quality
prefrontal cortex	UBERON:0000451	56.22	gold quality
kidney	UBERON:0002113	56.05	gold quality
right testis	UBERON:0004534	55.90	gold quality
duodenum	UBERON:0002114	55.59	gold quality
adult mammalian kidney	UBERON:0000082	55.01	gold quality
gall bladder	UBERON:0002110	53.80	gold quality
right lobe of liver	UBERON:0001114	52.71	gold quality
right adrenal gland	UBERON:0001233	52.30	gold quality
blood	UBERON:0000178	52.04	gold quality
metanephros cortex	UBERON:0010533	51.94	gold quality
liver	UBERON:0002107	51.91	gold quality
calcaneal tendon	UBERON:0003701	51.73	silver quality
right adrenal gland cortex	UBERON:0035827	51.01	gold quality
primary visual cortex	UBERON:0002436	50.97	gold quality
monocyte	CL:0000576	50.96	silver quality
heart left ventricle	UBERON:0002084	50.66	gold quality
gastrocnemius	UBERON:0001388	49.53	gold quality
endometrium	UBERON:0001295	48.51	gold quality
left adrenal gland	UBERON:0001234	48.25	gold quality
placenta	UBERON:0001987	47.96	gold quality
body of pancreas	UBERON:0001150	47.44	gold quality
multicellular organism	UBERON:0000468	47.39	gold quality
left adrenal gland cortex	UBERON:0035825	47.13	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.