LINC02627

Summary

LINC02627 (long intergenic non-protein coding RNA 2627, HGNC:54106) is a long non-coding RNA gene on chromosome 10q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54106
Approved symbol	LINC02627
Name	long intergenic non-protein coding RNA 2627
Location	10q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229466
Ensembl biotype	lncRNA
Entrez	101927549
RNAcentral	URS0000759AE0 — lncRNA, 509 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 12 — 12 lncRNA

ENST00000447757, ENST00000663554, ENST00000666271, ENST00000836854, ENST00000836855, ENST00000836856, ENST00000836857, ENST00000836858, ENST00000836859, ENST00000836860, ENST00000836861, ENST00000836862

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000447757 — 4 exons

Exon	Start	End
ENSE00001600833	105819068	105819213
ENSE00001629824	105817918	105818026
ENSE00004256739	105820159	105820374
ENSE00004256741	105808225	105808991

Expression profiles

Bgee: expression breadth broad, 75 present calls, max score 60.76.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0102 / max 8.6972, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
111325	0.0102	3

Top tissues by expression

75 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ganglionic eminence	UBERON:0004023	60.76	gold quality
ventricular zone	UBERON:0003053	57.94	silver quality
testis	UBERON:0000473	55.33	gold quality
right testis	UBERON:0004534	54.71	gold quality
left testis	UBERON:0004533	53.60	gold quality
prefrontal cortex	UBERON:0000451	51.91	gold quality
skeletal muscle tissue	UBERON:0001134	51.63	silver quality
saliva-secreting gland	UBERON:0001044	51.00	silver quality
monocyte	CL:0000576	50.65	silver quality
lymph node	UBERON:0000029	48.60	silver quality
placenta	UBERON:0001987	47.56	silver quality
gall bladder	UBERON:0002110	46.49	silver quality
blood	UBERON:0000178	46.41	silver quality
multicellular organism	UBERON:0000468	45.91	gold quality
endometrium	UBERON:0001295	45.53	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	45.10	silver quality
cerebellum	UBERON:0002037	44.79	silver quality
frontal cortex	UBERON:0001870	44.52	silver quality
primary visual cortex	UBERON:0002436	44.43	silver quality
right hemisphere of cerebellum	UBERON:0014890	44.33	silver quality
cerebellar hemisphere	UBERON:0002245	43.82	silver quality
thoracic mammary gland	UBERON:0005200	43.53	silver quality
lung	UBERON:0002048	43.49	silver quality
islet of Langerhans	UBERON:0000006	43.48	silver quality
gastrocnemius	UBERON:0001388	43.17	silver quality
tibial artery	UBERON:0007610	42.81	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	42.77	silver quality
myometrium	UBERON:0001296	42.33	silver quality
prostate gland	UBERON:0002367	41.47	gold quality
brain	UBERON:0000955	41.41	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.