LINC02636

Summary

LINC02636 (long intergenic non-protein coding RNA 2636, HGNC:54119) is a long non-coding RNA gene on chromosome 10q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54119
Approved symbol	LINC02636
Name	long intergenic non-protein coding RNA 2636
Location	10q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224222
Ensembl biotype	lncRNA
Entrez	102723350
RNAcentral	URS00026A2156 — lncRNA, 9822 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000427247, ENST00000653732, ENST00000655496, ENST00000659203, ENST00000667615

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427247 — 4 exons

Exon	Start	End
ENSE00001601346	70007457	70007669
ENSE00001804261	69994626	69994854
ENSE00004054238	70007755	70007875
ENSE00004054239	70054090	70054209

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 83.02.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0177 / max 13.5464, expressed in 7 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
109810	0.0106	5
109809	0.0071	3

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.02	gold quality
superior frontal gyrus	UBERON:0002661	73.28	gold quality
right frontal lobe	UBERON:0002810	72.55	gold quality
primary visual cortex	UBERON:0002436	71.44	gold quality
Brodmann (1909) area 9	UBERON:0013540	70.80	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	70.08	gold quality
nucleus accumbens	UBERON:0001882	69.97	gold quality
right testis	UBERON:0004534	69.88	gold quality
caudate nucleus	UBERON:0001873	69.16	gold quality
sural nerve	UBERON:0015488	69.08	gold quality
anterior cingulate cortex	UBERON:0009835	68.55	gold quality
frontal cortex	UBERON:0001870	68.46	gold quality
left testis	UBERON:0004533	68.42	gold quality
cerebral cortex	UBERON:0000956	67.60	gold quality
putamen	UBERON:0001874	67.58	gold quality
testis	UBERON:0000473	67.57	gold quality
skeletal muscle tissue	UBERON:0001134	67.48	gold quality
cortical plate	UBERON:0005343	66.28	gold quality
brain	UBERON:0000955	66.24	gold quality
right hemisphere of cerebellum	UBERON:0014890	66.24	gold quality
cerebellar cortex	UBERON:0002129	65.80	gold quality
cerebellar hemisphere	UBERON:0002245	65.74	gold quality
cerebellum	UBERON:0002037	65.73	gold quality
prefrontal cortex	UBERON:0000451	64.41	gold quality
ventricular zone	UBERON:0003053	63.49	gold quality
hypothalamus	UBERON:0001898	63.20	gold quality
pituitary gland	UBERON:0000007	63.17	gold quality
temporal lobe	UBERON:0001871	62.60	gold quality
amygdala	UBERON:0001876	62.54	gold quality
ganglionic eminence	UBERON:0004023	62.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.