LINC02640

Summary

LINC02640 (long intergenic non-protein coding RNA 2640, HGNC:54123) is a long non-coding RNA gene on chromosome 10q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54123
Approved symbol	LINC02640
Name	long intergenic non-protein coding RNA 2640
Location	10q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233590
Ensembl biotype	lncRNA
Entrez	107984241
RNAcentral	URS00000BB865 — lncRNA, 465 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000429634, ENST00000444086

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000429634 — 2 exons

Exon	Start	End
ENSE00001598062	68233253	68233573
ENSE00001675470	68235338	68235433

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 85.80.

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	85.80	gold quality
right lobe of liver	UBERON:0001114	84.52	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.06	silver quality
liver	UBERON:0002107	78.99	gold quality
duodenum	UBERON:0002114	69.89	gold quality
hindlimb stylopod muscle	UBERON:0004252	67.63	gold quality
adult mammalian kidney	UBERON:0000082	67.22	gold quality
kidney	UBERON:0002113	66.32	gold quality
body of pancreas	UBERON:0001150	66.28	gold quality
pancreas	UBERON:0001264	64.71	gold quality
sural nerve	UBERON:0015488	64.49	silver quality
endometrium	UBERON:0001295	63.24	gold quality
body of stomach	UBERON:0001161	62.75	gold quality
cortex of kidney	UBERON:0001225	62.49	gold quality
mucosa of transverse colon	UBERON:0004991	62.10	gold quality
stomach	UBERON:0000945	61.55	gold quality
skeletal muscle tissue	UBERON:0001134	61.50	gold quality
mucosa of stomach	UBERON:0001199	61.41	gold quality
stromal cell of endometrium	CL:0002255	60.88	gold quality
right adrenal gland	UBERON:0001233	60.85	gold quality
vermiform appendix	UBERON:0001154	60.70	gold quality
right uterine tube	UBERON:0001302	60.48	gold quality
right adrenal gland cortex	UBERON:0035827	60.02	gold quality
islet of Langerhans	UBERON:0000006	59.52	gold quality
small intestine	UBERON:0002108	59.49	gold quality
calcaneal tendon	UBERON:0003701	58.95	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	58.81	gold quality
small intestine Peyer’s patch	UBERON:0003454	58.77	gold quality
gall bladder	UBERON:0002110	58.66	gold quality
placenta	UBERON:0001987	58.48	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.