LINC02641

Summary

LINC02641 (long intergenic non-protein coding RNA 2641, HGNC:54125) is a long non-coding RNA gene on chromosome 10q26.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54125
Approved symbol	LINC02641
Name	long intergenic non-protein coding RNA 2641
Location	10q26.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230131
Ensembl biotype	lncRNA
Entrez	105378531
RNAcentral	URS0000EF6793 — lncRNA, 1727 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 51 — 51 lncRNA

ENST00000448347, ENST00000448671, ENST00000655916, ENST00000656554, ENST00000659823, ENST00000662754, ENST00000663275, ENST00000665370, ENST00000665978, ENST00000671449, ENST00000671662, ENST00000749006, ENST00000749007, ENST00000749008, ENST00000752343, ENST00000812698, ENST00000812699, ENST00000812700, ENST00000812701, ENST00000812702, ENST00000812703, ENST00000812704, ENST00000812705, ENST00000812706, ENST00000812707, ENST00000812708, ENST00000812709, ENST00000812710, ENST00000812711, ENST00000812712, ENST00000812713, ENST00000812714, ENST00000812715, ENST00000812716, ENST00000812717, ENST00000812718, ENST00000812719, ENST00000812720, ENST00000812721, ENST00000812722, ENST00000812723, ENST00000812724, ENST00000812725, ENST00000812726, ENST00000812727, ENST00000812728, ENST00000812729, ENST00000812730, ENST00000812736, ENST00000812737, ENST00000812738

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000448347 — 5 exons

Exon	Start	End
ENSE00001605251	123449353	123449512
ENSE00001648500	123517624	123517708
ENSE00001741848	123356450	123356544
ENSE00001762979	123361889	123362147
ENSE00001806363	123361319	123361550

Expression profiles

Bgee: expression breadth ubiquitous, 120 present calls, max score 84.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0499 / max 57.7389, expressed in 3 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
107500	0.0313	3
107501	0.0097	3
107499	0.0089	3

Top tissues by expression

120 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	84.38	gold quality
left testis	UBERON:0004533	81.46	gold quality
testis	UBERON:0000473	80.98	gold quality
right testis	UBERON:0004534	79.12	gold quality
bone marrow cell	CL:0002092	72.16	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.28	gold quality
granulocyte	CL:0000094	62.63	gold quality
ventricular zone	UBERON:0003053	62.41	gold quality
adrenal tissue	UBERON:0018303	60.45	gold quality
leukocyte	CL:0000738	57.63	gold quality
ganglionic eminence	UBERON:0004023	57.20	gold quality
sural nerve	UBERON:0015488	56.91	silver quality
monocyte	CL:0000576	56.56	gold quality
blood	UBERON:0000178	53.35	gold quality
rectum	UBERON:0001052	52.47	gold quality
lower esophagus	UBERON:0013473	52.30	gold quality
mucosa of transverse colon	UBERON:0004991	52.26	gold quality
lower esophagus muscularis layer	UBERON:0035833	52.23	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	51.89	gold quality
gall bladder	UBERON:0002110	51.74	gold quality
descending thoracic aorta	UBERON:0002345	51.64	gold quality
muscle layer of sigmoid colon	UBERON:0035805	51.51	gold quality
lymph node	UBERON:0000029	51.21	gold quality
spleen	UBERON:0002106	50.64	gold quality
pituitary gland	UBERON:0000007	50.37	gold quality
colon	UBERON:0001155	50.20	gold quality
intestine	UBERON:0000160	50.07	gold quality
tibial artery	UBERON:0007610	49.56	gold quality
popliteal artery	UBERON:0002250	49.55	gold quality
right lung	UBERON:0002167	49.39	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.94

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.