LINC02642

Summary

LINC02642 (long intergenic non-protein coding RNA 2642, HGNC:54124) is a long non-coding RNA gene on chromosome 10p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54124
Approved symbol	LINC02642
Name	long intergenic non-protein coding RNA 2642
Location	10p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232591
Ensembl biotype	lncRNA
Entrez	105376388
RNAcentral	URS00026A1D3D — lncRNA, 3382 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000420395, ENST00000660269, ENST00000670632, ENST00000735328, ENST00000735329, ENST00000735330, ENST00000735331

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420395 — 4 exons

Exon	Start	End
ENSE00001598284	7467397	7467526
ENSE00001683452	7469434	7469593
ENSE00001731379	7445558	7445792
ENSE00001768371	7471911	7471942

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 86.68.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2833 / max 28.9322, expressed in 93 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
108188	0.2833	93

Top tissues by expression

208 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.68	gold quality
tendon of biceps brachii	UBERON:0008188	78.48	gold quality
buccal mucosa cell	CL:0002336	77.39	silver quality
myocardium	UBERON:0002349	76.39	gold quality
secondary oocyte	CL:0000655	71.46	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	70.18	gold quality
gingival epithelium	UBERON:0001949	67.88	gold quality
medial globus pallidus	UBERON:0002477	67.05	gold quality
oocyte	CL:0000023	66.92	silver quality
decidua	UBERON:0002450	66.74	gold quality
cerebellar vermis	UBERON:0004720	66.72	gold quality
gingiva	UBERON:0001828	66.29	gold quality
globus pallidus	UBERON:0001875	65.58	gold quality
cartilage tissue	UBERON:0002418	65.18	gold quality
quadriceps femoris	UBERON:0001377	64.17	gold quality
tonsil	UBERON:0002372	63.89	gold quality
vastus lateralis	UBERON:0001379	63.71	gold quality
bone marrow cell	CL:0002092	63.59	silver quality
body of tongue	UBERON:0011876	62.40	gold quality
thymus	UBERON:0002370	62.02	silver quality
mucosa of sigmoid colon	UBERON:0004993	61.94	gold quality
pharyngeal mucosa	UBERON:0000355	61.86	gold quality
skeletal muscle tissue	UBERON:0001134	61.85	gold quality
lymph node	UBERON:0000029	61.36	gold quality
tongue	UBERON:0001723	61.36	gold quality
sperm	CL:0000019	61.33	gold quality
vena cava	UBERON:0004087	61.08	gold quality
superior surface of tongue	UBERON:0007371	60.91	gold quality
nasal cavity epithelium	UBERON:0005384	60.54	gold quality
saphenous vein	UBERON:0007318	60.52	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.41

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.