LINC02645

Summary

LINC02645 (long intergenic non-protein coding RNA 2645, HGNC:54129) is a long non-coding RNA gene on chromosome 10p15.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54129
Approved symbol	LINC02645
Name	long intergenic non-protein coding RNA 2645
Location	10p15.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234170
Ensembl biotype	lncRNA
Entrez	105376351
RNAcentral	URS0000A76AF8 — lncRNA, 851 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 41 — 41 lncRNA

ENST00000414107, ENST00000439973, ENST00000441907, ENST00000655634, ENST00000658961, ENST00000661232, ENST00000662131, ENST00000663504, ENST00000664302, ENST00000664791, ENST00000665692, ENST00000666064, ENST00000667195, ENST00000668732, ENST00000773598, ENST00000773599, ENST00000773600, ENST00000773601, ENST00000773602, ENST00000773603, ENST00000773604, ENST00000773605, ENST00000773606, ENST00000773607, ENST00000773608, ENST00000773609, ENST00000773610, ENST00000773611, ENST00000773612, ENST00000773613, ENST00000773614, ENST00000773615, ENST00000773616, ENST00000773617, ENST00000773618, ENST00000773619, ENST00000773620, ENST00000773621, ENST00000773622, ENST00000773623, ENST00000773624

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000414107 — 4 exons

Exon	Start	End
ENSE00001633035	2447295	2447350
ENSE00001791137	2446253	2446950
ENSE00003873823	2501558	2501683
ENSE00003881416	2501810	2501841

Expression profiles

Bgee: expression breadth broad, 82 present calls, max score 86.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0332 / max 16.2391, expressed in 9 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
107920	0.0176	7
107918	0.0084	4
107919	0.0071	2

Top tissues by expression

82 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	86.38	gold quality
testis	UBERON:0000473	70.00	gold quality
right testis	UBERON:0004534	69.75	gold quality
left testis	UBERON:0004533	69.38	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	67.65	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.38	gold quality
ganglionic eminence	UBERON:0004023	63.16	gold quality
cortical plate	UBERON:0005343	63.15	gold quality
sural nerve	UBERON:0015488	61.16	silver quality
adult mammalian kidney	UBERON:0000082	58.12	gold quality
islet of Langerhans	UBERON:0000006	56.87	gold quality
prefrontal cortex	UBERON:0000451	54.57	gold quality
blood	UBERON:0000178	53.48	gold quality
endometrium	UBERON:0001295	52.83	gold quality
multicellular organism	UBERON:0000468	52.25	gold quality
cortex of kidney	UBERON:0001225	51.68	silver quality
monocyte	CL:0000576	51.05	silver quality
primary visual cortex	UBERON:0002436	51.04	gold quality
frontal cortex	UBERON:0001870	50.11	gold quality
kidney	UBERON:0002113	49.80	gold quality
adrenal gland	UBERON:0002369	49.57	gold quality
gastrocnemius	UBERON:0001388	49.30	gold quality
tibial artery	UBERON:0007610	47.42	gold quality
cerebral cortex	UBERON:0000956	47.20	gold quality
heart left ventricle	UBERON:0002084	46.73	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	46.55	gold quality
Brodmann (1909) area 9	UBERON:0013540	46.41	gold quality
heart	UBERON:0000948	46.02	silver quality
tibial nerve	UBERON:0001323	45.85	gold quality
Ammon’s horn	UBERON:0001954	45.04	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.