LINC02647

Summary

LINC02647 (long intergenic non-protein coding RNA 2647, HGNC:54131) is a long non-coding RNA gene on chromosome 10q23.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54131
Approved symbol	LINC02647
Name	long intergenic non-protein coding RNA 2647
Location	10q23.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223993
Ensembl biotype	lncRNA
Entrez	101929646
RNAcentral	URS0000759F36 — lncRNA, 674 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000444137, ENST00000655081, ENST00000655477, ENST00000658106, ENST00000669767, ENST00000766255

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000444137 — 2 exons

Exon	Start	End
ENSE00001785094	85431943	85432232
ENSE00001787491	85432403	85432515

Expression profiles

Bgee: expression breadth broad, 42 present calls, max score 94.23.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0084 / max 10.3750, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
110396	0.0084	3

Top tissues by expression

42 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	94.23	gold quality
left testis	UBERON:0004533	68.30	gold quality
right testis	UBERON:0004534	67.59	gold quality
testis	UBERON:0000473	67.58	gold quality
multicellular organism	UBERON:0000468	60.75	gold quality
prefrontal cortex	UBERON:0000451	53.63	gold quality
gastrocnemius	UBERON:0001388	53.05	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	52.44	silver quality
blood	UBERON:0000178	51.50	gold quality
monocyte	CL:0000576	50.35	silver quality
dorsolateral prefrontal cortex	UBERON:0009834	46.99	gold quality
adipose tissue	UBERON:0001013	46.88	gold quality
right frontal lobe	UBERON:0002810	46.40	gold quality
tibial nerve	UBERON:0001323	45.42	gold quality
amygdala	UBERON:0001876	45.09	gold quality
left coronary artery	UBERON:0001626	45.01	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.03	gold quality
esophagus mucosa	UBERON:0002469	43.56	gold quality
heart left ventricle	UBERON:0002084	43.46	silver quality
thyroid gland	UBERON:0002046	43.09	silver quality
skin of leg	UBERON:0001511	42.38	gold quality
tibial artery	UBERON:0007610	42.04	silver quality
Brodmann (1909) area 9	UBERON:0013540	41.41	silver quality
body of pancreas	UBERON:0001150	40.98	silver quality
zone of skin	UBERON:0000014	40.74	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	40.71	silver quality
transverse colon	UBERON:0001157	40.56	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	39.87	silver quality
right ovary	UBERON:0002118	39.83	silver quality
lower esophagus muscularis layer	UBERON:0035833	39.49	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.