LINC02648

Summary

LINC02648 (long intergenic non-protein coding RNA 2648, HGNC:54132) is a long non-coding RNA gene on chromosome 10p14.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54132
Approved symbol	LINC02648
Name	long intergenic non-protein coding RNA 2648
Location	10p14
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225948
Ensembl biotype	lncRNA
Entrez	101928150
RNAcentral	URS000075ADD8 — lncRNA, 3470 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000448835, ENST00000772887, ENST00000850577

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000448835 — 5 exons

Exon	Start	End
ENSE00001599795	6618716	6618776
ENSE00001798956	6620918	6621173
ENSE00004137342	6621710	6621862
ENSE00004137344	6638313	6638665
ENSE00004137345	6625317	6625399

Expression profiles

Bgee: expression breadth ubiquitous, 116 present calls, max score 98.84.

Top tissues by expression

116 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	98.84	gold quality
lymph node	UBERON:0000029	78.13	gold quality
blood	UBERON:0000178	71.54	gold quality
vermiform appendix	UBERON:0001154	71.27	gold quality
granulocyte	CL:0000094	71.25	gold quality
hindlimb stylopod muscle	UBERON:0004252	70.31	gold quality
gastrocnemius	UBERON:0001388	68.92	gold quality
muscle of leg	UBERON:0001383	68.89	gold quality
skeletal muscle tissue	UBERON:0001134	66.42	gold quality
tonsil	UBERON:0002372	65.80	gold quality
metanephros cortex	UBERON:0010533	64.78	gold quality
spleen	UBERON:0002106	64.45	gold quality
right uterine tube	UBERON:0001302	63.92	gold quality
mucosa of transverse colon	UBERON:0004991	63.82	gold quality
endometrium	UBERON:0001295	62.82	gold quality
gall bladder	UBERON:0002110	61.82	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	61.32	gold quality
cortex of kidney	UBERON:0001225	61.19	gold quality
small intestine Peyer’s patch	UBERON:0003454	60.79	gold quality
small intestine	UBERON:0002108	60.62	gold quality
duodenum	UBERON:0002114	60.48	gold quality
bone marrow	UBERON:0002371	59.76	gold quality
fallopian tube	UBERON:0003889	59.64	gold quality
leukocyte	CL:0000738	59.52	gold quality
rectum	UBERON:0001052	58.07	gold quality
monocyte	CL:0000576	57.73	gold quality
right lung	UBERON:0002167	57.57	gold quality
liver	UBERON:0002107	57.15	gold quality
corpus callosum	UBERON:0002336	56.74	gold quality
superior frontal gyrus	UBERON:0002661	56.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.43

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.