LINC02654

Summary

LINC02654 (long intergenic non-protein coding RNA 2654, HGNC:54140) is a long non-coding RNA gene on chromosome 10p13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54140
Approved symbol	LINC02654
Name	long intergenic non-protein coding RNA 2654
Location	10p13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000226140
Ensembl biotype	lncRNA
Entrez	102724039
RNAcentral	URS00026A1C8B — lncRNA, 1491 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 15 — 15 lncRNA

ENST00000417542, ENST00000434386, ENST00000652949, ENST00000653570, ENST00000654129, ENST00000655111, ENST00000655950, ENST00000656314, ENST00000656914, ENST00000659592, ENST00000664373, ENST00000666333, ENST00000667599, ENST00000668798, ENST00000730983

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000417542 — 4 exons

Exon	Start	End
ENSE00001711630	16283730	16283908
ENSE00001787498	16288842	16288901
ENSE00001789026	16278701	16278749
ENSE00001794526	16295689	16295858

Expression profiles

Bgee: expression breadth broad, 37 present calls, max score 87.36.

Top tissues by expression

37 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	87.36	gold quality
bone marrow	UBERON:0002371	55.79	gold quality
monocyte	CL:0000576	55.17	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	54.95	gold quality
amygdala	UBERON:0001876	53.29	gold quality
blood	UBERON:0000178	52.24	gold quality
prefrontal cortex	UBERON:0000451	51.12	gold quality
small intestine	UBERON:0002108	48.69	gold quality
tibial artery	UBERON:0007610	47.85	gold quality
testis	UBERON:0000473	47.27	gold quality
superior frontal gyrus	UBERON:0002661	47.22	silver quality
colon	UBERON:0001155	47.17	silver quality
right hemisphere of cerebellum	UBERON:0014890	47.10	silver quality
right testis	UBERON:0004534	46.74	gold quality
esophagus mucosa	UBERON:0002469	46.55	silver quality
multicellular organism	UBERON:0000468	46.48	gold quality
gastrocnemius	UBERON:0001388	46.40	silver quality
left testis	UBERON:0004533	46.14	gold quality
cerebellar hemisphere	UBERON:0002245	46.00	silver quality
heart	UBERON:0000948	45.89	gold quality
right atrium auricular region	UBERON:0006631	45.53	gold quality
esophagus	UBERON:0001043	44.84	gold quality
caudate nucleus	UBERON:0001873	42.99	silver quality
Ammon’s horn	UBERON:0001954	42.37	silver quality
right frontal lobe	UBERON:0002810	42.18	gold quality
Brodmann (1909) area 9	UBERON:0013540	42.12	gold quality
lung	UBERON:0002048	41.85	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	41.49	silver quality
subcutaneous adipose tissue	UBERON:0002190	40.70	gold quality
putamen	UBERON:0001874	40.34	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.