LINC02658

Summary

LINC02658 (long intergenic non-protein coding RNA 2658, HGNC:54144) is a long non-coding RNA gene on chromosome 10q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:54144
Approved symbol	LINC02658
Name	long intergenic non-protein coding RNA 2658
Location	10q11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234973
Ensembl biotype	lncRNA
Entrez	102724264
RNAcentral	URS0000A77064 — lncRNA, 621 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000419406, ENST00000423349, ENST00000775250, ENST00000775251

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000419406 — 2 exons

Exon	Start	End
ENSE00001635270	43777562	43777850
ENSE00004141869	43778707	43778939

Expression profiles

Bgee: expression breadth broad, 46 present calls, max score 74.79.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0039 / max 2.7065, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
109189	0.0039	3

Top tissues by expression

46 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	74.79	gold quality
testis	UBERON:0000473	74.31	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.62	gold quality
right testis	UBERON:0004534	72.56	gold quality
multicellular organism	UBERON:0000468	63.77	gold quality
monocyte	CL:0000576	60.53	gold quality
bone marrow	UBERON:0002371	59.27	gold quality
gastrocnemius	UBERON:0001388	57.28	gold quality
adrenal gland	UBERON:0002369	51.34	gold quality
blood	UBERON:0000178	51.16	silver quality
body of pancreas	UBERON:0001150	50.71	gold quality
nucleus accumbens	UBERON:0001882	49.87	gold quality
heart left ventricle	UBERON:0002084	49.71	gold quality
cortex of kidney	UBERON:0001225	48.73	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	48.05	gold quality
body of stomach	UBERON:0001161	47.85	gold quality
muscle layer of sigmoid colon	UBERON:0035805	47.77	gold quality
tibial artery	UBERON:0007610	47.66	gold quality
left coronary artery	UBERON:0001626	47.61	gold quality
adrenal tissue	UBERON:0018303	47.36	silver quality
omental fat pad	UBERON:0010414	47.15	gold quality
esophagus mucosa	UBERON:0002469	46.93	gold quality
spleen	UBERON:0002106	46.85	gold quality
minor salivary gland	UBERON:0001830	46.82	gold quality
right adrenal gland cortex	UBERON:0035827	46.46	gold quality
subcutaneous adipose tissue	UBERON:0002190	46.29	gold quality
left adrenal gland	UBERON:0001234	45.01	gold quality
esophagus	UBERON:0001043	44.85	gold quality
tibial nerve	UBERON:0001323	44.02	gold quality
transverse colon	UBERON:0001157	43.82	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.47

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.